Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28150 283 / 1e-94 Plant protein of unknown function (DUF868) (.1) AT3G04860 277 / 3e-92 Plant protein of unknown function (DUF868) (.1) AT4G12690 166 / 4e-49 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT2G04220 166 / 1e-48 Plant protein of unknown function (DUF868) (.1) AT5G48270 160 / 2e-46 Plant protein of unknown function (DUF868) (.1) AT3G13229 140 / 2e-39 Plant protein of unknown function (DUF868) (.1) AT2G27770 133 / 3e-36 Plant protein of unknown function (DUF868) (.1) AT5G11000 121 / 2e-31 Plant protein of unknown function (DUF868) (.1) AT2G25200 94 / 2e-21 Plant protein of unknown function (DUF868) (.1) AT2G36470 86 / 6e-19 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042600 [exp] 570 / 0 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 273 / 7e-91 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 272 / 2e-90 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 156 / 4e-45 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 155 / 2e-44 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 149 / 4e-42 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 145 / 1e-40 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10032896 [exp] 144 / 1e-40 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 144 / 2e-40 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210800 [exp] 341 / 2e-117 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 338 / 2e-116 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 310 / 6e-105 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 303 / 1e-102 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 164 / 3e-48 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.005G068100 [exp] 161 / 4e-47 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 160 / 6e-47 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.001G467500 [exp] 159 / 2e-46 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 158 / 1e-45 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.004G187600 [exp] 152 / 1e-43 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10022050 pacid=23160307 polypeptide=Lus10022050 locus=Lus10022050.g ID=Lus10022050.BGIv1.0 annot-version=v1.0 ATGCTTCTGAGAGCAATTACAGACAGGAAGAAACTTAAGGAATTCCCGTCATGCTTCGGAGAGAGCGGGGTCCAAGTAGCCGATTCCTCTTCAGCTTCTT CCCCATCATCAGCTTCCAAATCCGCTCAACAACAAAACCTCGTCACCTGCGTCTACAACTGCAAATTGCGCCACCTTCTCCCATGCTTCATCACGGTAAC TTGGTCCAAAACACTCATGGGTCAAGGTCTAGGTATCACAATCGAAAATTCCTTCCACCAGTGTCTCTGTAGAGTCGATATAAAGCCATGGCTGTTCTCC AAGAGGAAAGGATTGAAAACCCTAGAAATCGATAATTCCGACAGAATCGACATCTATTGGGATGTCTCCTCTGCTAAATTCGGTCCCGGCAGCCCCGAGC CGTTACAAGGGTTCTACTTGGCCGTTGGATTCAACCGCGAAATCGTGTTGCTGATTGGTGATCTGAGGAAAGAGGCCTGTAAGAAATTTGAAACCGATCG GGCGATTCTTCGGTCGAATTCGAGTAATAATGCTGTGTTTGTTGCCAAGAAGGAGCACATTTTTGGGAAGAAGTTTTATGGTGTTAAAGCTCAGTTCTTT GGGGATGGGCAATTGCATGATGTTGGGATTGAGTGTGATAGTGACACTACCATGGTTGATCATTGTCTTGTGATCAAGGTGGATGGTAAAGTGGTGATGC AGGTGAAGAGATTGAAGTGGAAGTTTCGTGGGAATGGGACGATATCGGTGGATGGCTTGCCGGTTGAGGTGTTTTGGGATGTTCATGACTGGTTATTTGG TGGTGGTGGTGGTGCAATGGGGGGGAATAATGCAGTGTTTATGTTCCAGACTTGTTTGTCTGCTGAGAAGCTGTGGAATAGCGGCCAGCAGCAGGTGTTC GATCTTTCTGCAGCATCGAGTGGTGGTGATGCTATGAGATTCAAGGAGTGCCAACCACAACAACAAAGTCTTGGTTTCTCGCTTGTTTTGTATGCTTGGA AGAAGAATGATTGA
AA sequence Show only first row Show all	>Lus10022050 pacid=23160307 polypeptide=Lus10022050 locus=Lus10022050.g ID=Lus10022050.BGIv1.0 annot-version=v1.0 MLLRAITDRKKLKEFPSCFGESGVQVADSSSASSPSSASKSAQQQNLVTCVYNCKLRHLLPCFITVTWSKTLMGQGLGITIENSFHQCLCRVDIKPWLFS KRKGLKTLEIDNSDRIDIYWDVSSAKFGPGSPEPLQGFYLAVGFNREIVLLIGDLRKEACKKFETDRAILRSNSSNNAVFVAKKEHIFGKKFYGVKAQFF GDGQLHDVGIECDSDTTMVDHCLVIKVDGKVVMQVKRLKWKFRGNGTISVDGLPVEVFWDVHDWLFGGGGGAMGGNNAVFMFQTCLSAEKLWNSGQQQVF DLSAASSGGDAMRFKECQPQQQSLGFSLVLYAWKKND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28150			Plant protein of unknown funct...		Lus10022050 [exp]	0	1
AT4G21620			glycine-rich protein (.1.2)		Lus10018454 [exp]	6.7	0.7712
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	11.0	0.8157
AT5G23160			unknown protein		Lus10013437 [exp]	13.5	0.8403
AT3G06070			unknown protein		Lus10034044 [exp]	15.5	0.8504
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	17.0	0.7880
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	19.4	0.8227
					Lus10019921 [exp]	22.1	0.8112
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10026702 [exp]	22.6	0.7229
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	22.6	0.8098
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	23.2	0.8162

Compare expression of checked genes

Lus10022050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.