Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022056 [exp] 205 / 2e-70 ND 36 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022054 pacid=23160215 polypeptide=Lus10022054 locus=Lus10022054.g ID=Lus10022054.BGIv1.0 annot-version=v1.0 ATGGCCAGTGACATTGTGACCTTGCGGAACTTTCCAATTGATCGACCAACTGGTGCCTCTATCTGCAGCTTCTCCATGCCTGGAAGGTTGGCAATCCGGC GACTCCCGACACCTATTTCACTTTTGGCACCCTCTGGTGCGACGAGGAGGGAACCACTGTGGAGGTCACCTCATTTCGCCGTCATGCTGACATTATCAGT GCGCGTGTTTCTGTCGGGTCGGTATACACGGTTCGCGATTTCGGATGTCGCGCAGTCAATACTGAGCTTCATCCTTCCATCGCCTTTTGAGTCTGGTGCT TACTATGTCGTTTAA
AA sequence Show only first row Show all	>Lus10022054 pacid=23160215 polypeptide=Lus10022054 locus=Lus10022054.g ID=Lus10022054.BGIv1.0 annot-version=v1.0 MASDIVTLRNFPIDRPTGASICSFSMPGRLAIRRLPTPISLLAPSGATRREPLWRSPHFAVMLTLSVRVFLSGRYTRFAISDVAQSILSFILPSPFESGA YYVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022054 [exp]	0	1
					Lus10022056 [exp]	1.0	0.9546
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10034085 [exp]	5.5	0.5945
					Lus10025539 [exp]	26.8	0.5817
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005116 [exp]	52.4	0.5965
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10016686 [exp]	73.4	0.5731
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	117.3	0.5591
AT1G17400			unknown protein		Lus10027660 [exp]	129.0	0.5452
AT1G16445			S-adenosyl-L-methionine-depend...		Lus10031751 [exp]	226.0	0.5271

Compare expression of checked genes

Lus10022054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.