Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36740 138 / 2e-34 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 134 / 3e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G14920 118 / 9e-28 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 105 / 8e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14980 100 / 5e-22 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 84 / 7e-17 PHD finger transcription factor, putative (.1) AT5G63900 63 / 3e-10 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 59 / 6e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 56 / 5e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 55 / 9e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022053 [exp] 989 / 0 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 891 / 0 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 142 / 1e-35 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10006110 [exp] 141 / 2e-35 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10025387 [exp] 89 / 3e-18 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10015266 [exp] 87 / 2e-17 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 85 / 4e-17 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 74 / 1e-13 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10018681 [exp] 74 / 2e-13 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051400 [exp] 177 / 2e-47 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 160 / 6e-42 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 152 / 5e-39 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 146 / 4e-37 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 113 / 1e-26 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.001G392801 [exp] 102 / 1e-22 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G118600 [exp] 83 / 2e-16 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.009G072600 [exp] 82 / 4e-16 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.009G003900 [exp] 58 / 1e-08 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 54 / 1e-07 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022055 pacid=23160301 polypeptide=Lus10022055 locus=Lus10022055.g ID=Lus10022055.BGIv1.0 annot-version=v1.0 ATGGTCTTGGAGAGAGAGGATGAAATGATATCTGCTGCATCCATTCGGATCCACGGGAATCATTTGGCAGAGATGCCTTTCATTGGTACCCGTCATATGT ATAGGCGGCAAGGAATGTGTCGGCGCCTTTTAAGTGCAATTAATAGTGCTCTTTCCTCGCTAAACGTGGAGAGATTGGTAATACCTGCAATATCTGAGTT AAAGGAAACATGGACCTCTGTCTTCGGTTTCGCACCTCTTGAGAGATTAAGCAGCCCAAAAATCAGAAACACGAACATGCTTGTGTTTCCTAGAGTTGAC ATGTTACAGAAACCAGTGTTGATTCAACAGCCTGATGGATACAACATGGCTACTGCCGAAGGTTCAAAATTGAATGATTCTGATGATAGATTACCAGCTG GATTTGATTTAAACAGCACTTATGAGCCTACTGAATCTTGCTCGCTTCCTGATGGCTGCTTGAATAATACTTCCGACTTGCCACATAATCTTAGTGATGG AGAGCCCCTTGATAAAATCTGTGAGATTCCTGGTAATGTGGAGAAAAATGGCGCAAATATACATAATCCTATCTCTGTTGGTGATGCCAGGGGACAAAGT GGAAAGTTTTCTGAACCTATGGCTGGCATTACTGATGAGAGAAAATGGGAATCGGGTTCCAAATCATTGATTTGCCATGTTGGTTCCGAATCTGGTGATT GTAGGAGACAATCCCTTGCCGATCATAAAGCAGCTCCTTCGGAAGTGAATCTGGAAGAGAAAATGGTTCCTGGTAAAGCAGCTCCTTCTGAAGTGAATCC CGAAGAGAAAATGGTTGATCTAAATCTGACTTCACATGAAGGCTCTGTCGATGATATGCAAGTCATGGATGATGAACACACTGGTCTGCCTTTGAAGTCC GAGCCGTCAAGTACTGATGATATCCATCAGGGATCCGAAATCAAAATCTTCCCTGATGAAATAGTACAGTCACACGAAAATGATGGAAGTAATAGCCATT GTGGCATCCCTGATGATCATCAAGATGATTCATTTCAGCAGAAGAACTTGAACGAGGCACATGGGAGGGAAGTTGGATCAAACCCTCTAATAACCAAGTC GAGTGACATCTCCGTTGCAGCTGAAAAAGATGCCCCTTCTCTGATGAAGCAGCGTCAGCCGAATACCGAGGATATGCAGCCCGCGAGTCCAGCTGCTGAG GTGGATATTGACAGACTGACGCAGCATGAGAAGGAAGCTGAATCAACCCCTCTAATCACCAACGAACCTTCTCATGCTGGTGCTCCAGATACCATGGTGG AACCTCAATGTCAAACGCACGAGCACGAACGAGATGCCCCTTCTCTGATGAAGCAGCCTCAGCCGAAAACTGAGGATATGCAGCCCGTGGATATTGACAG AATGACTCAGTGCAGTTTGGAACCAATGTGTTCTTCTTCGAGGTCTGGCCCTGGTGTCGGGATTCATTTGCCCGATTTGGGAGCATCAGTTCCTACAATA CCCCAAAGGTGA
AA sequence Show only first row Show all	>Lus10022055 pacid=23160301 polypeptide=Lus10022055 locus=Lus10022055.g ID=Lus10022055.BGIv1.0 annot-version=v1.0 MVLEREDEMISAASIRIHGNHLAEMPFIGTRHMYRRQGMCRRLLSAINSALSSLNVERLVIPAISELKETWTSVFGFAPLERLSSPKIRNTNMLVFPRVD MLQKPVLIQQPDGYNMATAEGSKLNDSDDRLPAGFDLNSTYEPTESCSLPDGCLNNTSDLPHNLSDGEPLDKICEIPGNVEKNGANIHNPISVGDARGQS GKFSEPMAGITDERKWESGSKSLICHVGSESGDCRRQSLADHKAAPSEVNLEEKMVPGKAAPSEVNPEEKMVDLNLTSHEGSVDDMQVMDDEHTGLPLKS EPSSTDDIHQGSEIKIFPDEIVQSHENDGSNSHCGIPDDHQDDSFQQKNLNEAHGREVGSNPLITKSSDISVAAEKDAPSLMKQRQPNTEDMQPASPAAE VDIDRLTQHEKEAESTPLITNEPSHAGAPDTMVEPQCQTHEHERDAPSLMKQPQPKTEDMQPVDIDRMTQCSLEPMCSSSRSGPGVGIHLPDLGASVPTI PQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	0	1
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	2.2	0.8910
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	2.6	0.8470
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	6.6	0.8876
AT3G52260			Pseudouridine synthase family ...		Lus10040385 [exp]	13.4	0.7641
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	15.5	0.8794
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	15.7	0.8633
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	16.7	0.8449
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	18.8	0.8482
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10027665 [exp]	19.5	0.8363
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	19.7	0.8606

Compare expression of checked genes

Lus10022055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.