Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02715 71 / 5e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042605 [exp] 234 / 2e-78 AT4G02715 154 / 4e-47 unknown protein Lus10014679 [exp] 143 / 1e-42 AT4G02715 115 / 1e-31 unknown protein Lus10006911 [exp] 140 / 1e-41 AT4G02715 122 / 6e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211400 [exp] 121 / 4e-34 AT4G02715 105 / 4e-28 unknown protein Potri.002G050900 [exp] 101 / 2e-26 AT4G02715 96 / 1e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022059 pacid=23160292 polypeptide=Lus10022059 locus=Lus10022059.g ID=Lus10022059.BGIv1.0 annot-version=v1.0 ATGGAGACACTTGTTGTAGCTGAACACAAGAATCAGTGCTATGGAAGAGTCAAGCCCCATGGCTCTGGGCGGCCTGGATCTTCCCCATCTAGACAGTTTA GAGCTATTAACTGCCGCACTTTCCAATCAGGACCTGGAATACTCCCTAACCCATTCAGCCCTACCTCCAAAACCAACGCCAAAACCAAAACCAAAATCAA AATCAATCACTCCGTTCCTTGCTCATCAGAGTCGCCATCTTCTCCTCCCAAAACGCCTTCCCATTTTAGCAAAGCTGCTCCTATCAGCTCCCCCATCCCT ATCAGCAGGAAGGAGGCTAGAAAATTATGTGTTTTCAGTGATAACTTGTTGATCCCAAGTGATGACGCTTGTTTCTCCGAGCTATGGGCTGGTCCTGCCT ATTCCAATTCACCACCTCCCAGTTCGTTGCCGATTCCTAAGTTCTCGATGAAGCCAAAACGAACTGTGTCATTGGAGTTGCCACTTCCTGATTCAGACTT TGAGCTGCCACCAATTGCCAAGTCTGCTCCGGCTTCCCCTTCTAGGGAACATGACTCACCCATGAAAGAACTATTATGTGCTGCTGATGATGCGACCAAG ATTCTTCGTCGCATTCTCAACCTTGATTTCGATAATTGA
AA sequence Show only first row Show all	>Lus10022059 pacid=23160292 polypeptide=Lus10022059 locus=Lus10022059.g ID=Lus10022059.BGIv1.0 annot-version=v1.0 METLVVAEHKNQCYGRVKPHGSGRPGSSPSRQFRAINCRTFQSGPGILPNPFSPTSKTNAKTKTKIKINHSVPCSSESPSSPPKTPSHFSKAAPISSPIP ISRKEARKLCVFSDNLLIPSDDACFSELWAGPAYSNSPPPSSLPIPKFSMKPKRTVSLELPLPDSDFELPPIAKSAPASPSREHDSPMKELLCAADDATK ILRRILNLDFDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02715			unknown protein		Lus10022059 [exp]	0	1
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10005611 [exp]	9.5	0.6863
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	12.2	0.6388
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	14.5	0.6760
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	38.1	0.6292
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	47.6	0.6330
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	55.5	0.5379
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10017502 [exp]	62.4	0.5688
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	62.6	0.5957
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	96.3	0.5497
AT5G37790			Protein kinase superfamily pro...		Lus10009125 [exp]	106.5	0.5312

Compare expression of checked genes

Lus10022059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.