Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63210 133 / 2e-37 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT3G22550 123 / 8e-34 Protein of unknown function (DUF581) (.1) AT5G11460 87 / 2e-19 Protein of unknown function (DUF581) (.1) AT2G25690 68 / 5e-13 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT5G20700 63 / 1e-11 Protein of unknown function (DUF581) (.1) AT5G65040 60 / 3e-11 Protein of unknown function (DUF581) (.1) AT1G22160 60 / 4e-11 Protein of unknown function (DUF581) (.1) AT5G49120 57 / 5e-10 Protein of unknown function (DUF581) (.1) AT1G53885 56 / 1e-09 Protein of unknown function (DUF581) (.1) AT1G53903 56 / 1e-09 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042606 [exp] 447 / 9e-161 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 152 / 8e-45 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 150 / 1e-43 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 99 / 1e-23 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10022948 [exp] 54 / 2e-08 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 53 / 3e-08 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 52 / 4e-08 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 51 / 8e-08 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 50 / 2e-07 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211500 [exp] 245 / 5e-81 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 232 / 1e-75 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 166 / 9e-50 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 160 / 2e-47 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 108 / 4e-27 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 103 / 2e-25 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 90 / 2e-20 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 61 / 1e-10 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 57 / 4e-10 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 56 / 1e-09 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10022060 pacid=23160210 polypeptide=Lus10022060 locus=Lus10022060.g ID=Lus10022060.BGIv1.0 annot-version=v1.0 ATGTCGACTGATCATCACCAGACAACAACAACTAATCCTCAATCTCCCCAAAACCAGGCATCAACCAAACCCATAATCCTCCAATCCCTCTTAGCTTCTC CAAGGTTCAAAGCATTCACATCCAAATCCATACCCATACCCATACCCGAAACCGAGTCCTTAATCAGTCCAACCTCCATTCTCGACTCCTGCAAACCTTT CTCACCTCTTAGAACCCCATTTCTCCCCAAAAGACCCAATCTTTTCTCAGAAACCAAACACCAATGGGACGACAAACTGCTCAAGTCCAAAGGCATTGGT GTTGCACTAATTGACGACAAGAAGAAACTGAAACCCGTCAATGGATTCAAACTAAGAGTGCAGATACCACCTCCCTTGCTTTCAAATTCTCCCGAGCCCA AATCCCCAGCTGAGTTTGGGACCAAGACGACAAGAACAGTTAATAATACCAGCAACCAGTTGGTCGCTGATTCCAAAAGGTTGTTCACTGAATGTCTGTC GGTTACTGAGATGGAGCTGTCTGAGGATTATACATGTGTGATCTCTCGGAATGGATCGAATCCGAAGACGACTCATATATTTGATAACTGTGTTGTGGAG AATTACTTCTGTTTATCATCGGAGGATTCAGTACTACCTGTTGTTCCCCAGATGAACAACAGCAGCGACTTTCTCAACTTCTGCTATACTTGCAAGAAGA GCCTTGAACAGAAGCGTGACATCTTCATTTACAGAGGAGACAAGGCTTTCTGCAGTGTAGAATGCAGGTACCAGGAGATGCTGTTGGATGGAGGATTGGA GAGTTAA
AA sequence Show only first row Show all	>Lus10022060 pacid=23160210 polypeptide=Lus10022060 locus=Lus10022060.g ID=Lus10022060.BGIv1.0 annot-version=v1.0 MSTDHHQTTTTNPQSPQNQASTKPIILQSLLASPRFKAFTSKSIPIPIPETESLISPTSILDSCKPFSPLRTPFLPKRPNLFSETKHQWDDKLLKSKGIG VALIDDKKKLKPVNGFKLRVQIPPPLLSNSPEPKSPAEFGTKTTRTVNNTSNQLVADSKRLFTECLSVTEMELSEDYTCVISRNGSNPKTTHIFDNCVVE NYFCLSSEDSVLPVVPQMNNSSDFLNFCYTCKKSLEQKRDIFIYRGDKAFCSVECRYQEMLLDGGLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	0	1
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	4.9	0.9207
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	5.2	0.9223
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	7.1	0.9156
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	7.3	0.8742
AT3G26850			histone-lysine N-methyltransfe...		Lus10002082 [exp]	8.1	0.9060
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	8.5	0.9113
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10042278 [exp]	11.0	0.8938
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	12.2	0.9093
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	13.4	0.8985
AT5G63460			SAP domain-containing protein ...		Lus10016762 [exp]	13.5	0.8915

Compare expression of checked genes

Lus10022060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.