Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63220 465 / 2e-165 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 117 / 1e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 108 / 1e-26 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 105 / 3e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 103 / 1e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G03030 95 / 2e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 92 / 2e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 87 / 5e-19 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 88 / 7e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G02980 86 / 1e-18 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042607 [exp] 336 / 2e-115 AT3G63220 298 / 1e-100 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013899 [exp] 125 / 1e-31 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 121 / 6e-31 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 114 / 4e-28 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 113 / 1e-27 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 103 / 3e-24 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 102 / 1e-23 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 99 / 8e-23 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 97 / 2e-22 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050600 [exp] 566 / 0 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 551 / 0 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 125 / 2e-32 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 115 / 5e-29 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 114 / 1e-28 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 112 / 4e-28 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G170000 [exp] 105 / 7e-25 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 103 / 2e-24 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 102 / 3e-24 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 100 / 3e-23 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10022061 pacid=23160249 polypeptide=Lus10022061 locus=Lus10022061.g ID=Lus10022061.BGIv1.0 annot-version=v1.0 ATGTCTGAATTGATCGAAGGACTGCCCGACTCTGTAGCCATAAGGTGCCTCGCACGGGTTCCCTTTTACCAATTCCCCAAGTTAGAAGCCGTCTCCCGAT CATGGCAAGCCGCCATTCGCGGCTCTGAGCTCTATAAAGCCCGCCAAGAGGTAGGCTCGACCGAAGATCTTCTATGTGTGTGCGCTTTCGATCCCGAAAA CATATGGCAACTGTACGATCCTCTACGAAAGCTCTGGATCACTCTCCCTATTCTTCCATCAAAGGTAAGGAATTTGGCTCAATTTGGCGCCGTCTCAGTC AGTGGAAAGCTCTATGTACTTGGTGGCAATAGTGATGCCGTTGACTTATTGACCGGGGATCAAGATGGAAGCTTTGCAACCAATGAAGTCTGGTCATATG ACCCGATACTACGAACATGGGCTCGGCGCGCATCGATGCTCGTTCCCCGTGCAATGTTCGCTTGCTGTGCTTTGAACGGAAAGATAGTTGTGGCTGGTGG CTTAACTCGGGGTCGAAAACCGGTTTATCAAGCCGAAATGTACGACCCGGATAAGGATGTGTGGGTGCCAATACCCGATGTTCATCGTACTCAGAATGCT GCTTGCACGGGACTGATTATCGGTGGGAAGTTGCATGTTCTACATAGAGGGTTGTCGACCGTGCAAGTTTTGGACAGCGTAGCATCCAGGTGGACGGTGG AGGATTTCGGGTGGCTCCAAGGCCCGATGGCAGTTGTCGAGAGCGATCTTTACGTAATGAGCCACGGGCTGATAGTGAAGCAAGAAGGGGCAGTGAAGAA GGTGGCAGTGAAGAAGGTAGTGGTCTCAGCATCGGAGTTCCGGAAAAGGATCGGAGTGGGGATGACGGAGCTTCGGGGTGAGATATATGTGTTGGGAGGG TTGATTGGTCCTGATCAGTGGAATTGGGGTGTGCAGCCGTTGTCGGATGTTGATGTGTTGACCGTTGGTGGGGAGAGGCCTACGTGGCATAGAGCAGCTC CGATGACGAGGTGCCGTGGAACCATATTAGGATGTACACAGCTGAGAATTTAG
AA sequence Show only first row Show all	>Lus10022061 pacid=23160249 polypeptide=Lus10022061 locus=Lus10022061.g ID=Lus10022061.BGIv1.0 annot-version=v1.0 MSELIEGLPDSVAIRCLARVPFYQFPKLEAVSRSWQAAIRGSELYKARQEVGSTEDLLCVCAFDPENIWQLYDPLRKLWITLPILPSKVRNLAQFGAVSV SGKLYVLGGNSDAVDLLTGDQDGSFATNEVWSYDPILRTWARRASMLVPRAMFACCALNGKIVVAGGLTRGRKPVYQAEMYDPDKDVWVPIPDVHRTQNA ACTGLIIGGKLHVLHRGLSTVQVLDSVASRWTVEDFGWLQGPMAVVESDLYVMSHGLIVKQEGAVKKVAVKKVVVSASEFRKRIGVGMTELRGEIYVLGG LIGPDQWNWGVQPLSDVDVLTVGGERPTWHRAAPMTRCRGTILGCTQLRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	0	1
AT4G29960			unknown protein		Lus10001629 [exp]	1.4	0.9240
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10035175 [exp]	2.8	0.9109
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10039651 [exp]	3.3	0.9031
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	4.2	0.9212
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	6.6	0.8881
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	7.7	0.9125
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	8.1	0.9131
AT3G53490			unknown protein		Lus10003989 [exp]	9.0	0.9073
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	9.5	0.8994
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	10.0	0.9137

Compare expression of checked genes

Lus10022061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.