Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05620 506 / 0 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) AT2G36310 313 / 2e-106 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT5G18860 49 / 4e-06 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 47 / 9e-06 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18870 46 / 1e-05 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042608 [exp] 617 / 0 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10003251 [exp] 337 / 1e-115 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10035601 [exp] 333 / 4e-106 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10041249 [exp] 56 / 2e-08 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10033998 [exp] 49 / 3e-06 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10012778 [exp] 44 / 0.0002 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144600 [exp] 546 / 0 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Potri.006G083400 [exp] 314 / 2e-106 AT2G36310 534 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Potri.008G197400 [exp] 56 / 2e-08 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197500 [exp] 55 / 3e-08 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Lus10022062 pacid=23160230 polypeptide=Lus10022062 locus=Lus10022062.g ID=Lus10022062.BGIv1.0 annot-version=v1.0 ATGGCGCCCAAGAAGATCATCATCGATACTGATCCTGGGATCGATGACGCCATGGCAATATTTCTTGCACTACGGTCACCGGAAGTTGAGGTCATCGGGT TGACGACTATATTCGGGAACGTTTACACTGCTCTCGCAACCATGAACGCTTTGCATTTGTTAGAGGTTGCAGGAAGGACTGATATTCCAGTGGCCGAGGG TTCTCATGTTACTATAACTAAAGGTACAAAGCTTCGGATTGCGGATTTTGTTCACGGGACGGATGGACTAGGAAACCAGAAGTTCCCGCCACCTAATGGG AATGCTATTGAGCAATCTGCAGCTGCTTTTCTTCCTGGCGAAGTCACCGTGGTTGCATTGGGCCCCCTAACAAATATTGCACTGGCTATTGAGTCGGATC CTGCGTTTGTGAAAAACGTCGGTCAGATTGTTCTCCTTGGTGGTGCATTTGCTGTCAATGGTAATGTGAATCCTGCAGCAGAGGCAAATATCTTTGGTGA CCCGGAGGCTGCTGATATTGTTTTCACTAGTGGGGCAGATGTCGTGGCTGTGGGCATAAATGTAACTCATCAAGTTGTTCTAACAGACAGCGATCGAGAG AAATTAGCTAAATCAAATGGAAAATTTGCTCAGTACTTGTGCAAAATCCTCGACATCTACTTTTCTTATCATCATGAGGCGTATTGCACTAGAGGGGTTT ATCTTCATGATCCTGCTGTAGTGCTAGCTGCTGTGGATCCTTCACTTATGACATACACAGAGGGTGTCGTCAGAGTCCAGACCTGCGGCATAACGAGGGG GCTAACGGTACTCTATAATAAGCAGAAGAGGTTTGAAGAGGTTACTGAGTGGTCCGACAAACCCACGGTGAAGGTTGCAGTAACTGTTGATGCCCCTGCT GTTGTGAAATTGGTGATGGACCGGTTGATGGAATCGTGA
AA sequence Show only first row Show all	>Lus10022062 pacid=23160230 polypeptide=Lus10022062 locus=Lus10022062.g ID=Lus10022062.BGIv1.0 annot-version=v1.0 MAPKKIIIDTDPGIDDAMAIFLALRSPEVEVIGLTTIFGNVYTALATMNALHLLEVAGRTDIPVAEGSHVTITKGTKLRIADFVHGTDGLGNQKFPPPNG NAIEQSAAAFLPGEVTVVALGPLTNIALAIESDPAFVKNVGQIVLLGGAFAVNGNVNPAAEANIFGDPEAADIVFTSGADVVAVGINVTHQVVLTDSDRE KLAKSNGKFAQYLCKILDIYFSYHHEAYCTRGVYLHDPAVVLAAVDPSLMTYTEGVVRVQTCGITRGLTVLYNKQKRFEEVTEWSDKPTVKVAVTVDAPA VVKLVMDRLMES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	0	1
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	3.0	0.9485
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Lus10005648 [exp]	3.9	0.9531
					Lus10006087 [exp]	4.2	0.9433
AT4G19160			unknown protein		Lus10038244 [exp]	5.1	0.9500
AT3G53270			Small nuclear RNA activating c...		Lus10024665 [exp]	5.2	0.9286
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	5.5	0.9465
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	6.0	0.9465
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	6.0	0.9398
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	6.0	0.9336
AT5G59210			myosin heavy chain-related (.1...		Lus10016491 [exp]	7.0	0.9421

Compare expression of checked genes

Lus10022062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.