Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53690 176 / 2e-53 RING/U-box superfamily protein (.1) AT3G14250 141 / 3e-40 RING/U-box superfamily protein (.1) AT3G45470 103 / 1e-26 IBR domain containing protein (.1) AT5G37560 107 / 2e-26 RING/U-box superfamily protein (.1) AT2G25360 105 / 3e-26 RING/U-box superfamily protein (.1) AT4G19670 105 / 2e-25 RING/U-box superfamily protein (.1.2) AT5G60250 100 / 1e-23 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25370 99 / 3e-23 RING/U-box superfamily protein (.1.2) AT2G26135 96 / 9e-23 RING/U-box protein with C6HC-type zinc finger (.1) AT2G21420 97 / 1e-22 IBR domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042609 [exp] 119 / 1e-34 AT3G53690 59 / 4e-12 RING/U-box superfamily protein (.1) Lus10026104 [exp] 126 / 3e-34 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10000412 [exp] 125 / 6e-34 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10022064 [exp] 106 / 8e-29 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1) Lus10024093 [exp] 107 / 1e-27 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10036128 [exp] 110 / 2e-27 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 106 / 6e-26 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 104 / 4e-25 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 92 / 5e-21 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064400 [exp] 190 / 5e-58 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 139 / 2e-39 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 132 / 7e-37 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 121 / 6e-33 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 120 / 9e-33 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 116 / 3e-31 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 110 / 2e-27 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 103 / 9e-25 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G117600 [exp] 101 / 4e-24 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 89 / 6e-20 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10022063 pacid=23160221 polypeptide=Lus10022063 locus=Lus10022063.g ID=Lus10022063.BGIv1.0 annot-version=v1.0 ATGGGACAGCTCCTCACAACATTGCCGTCAACGGAAAACAAAGACCAACCGACGACCGGAAAAGAAGCCAACCGCAGCACAGCCGGACCAACCTTCGTAT GCGAAATCTGCGTAGAAACGACACCGTTGCGACAATCCTTCAACCCAAAGAACTGTACACACTTGTACTGCAATCACTGCACCGTACGATACATCGAGAC GGAGCTCTCCGAGAAATCGTCCACCCGAATCTCCTGCCTCGAACCCGGATGCCAGGGGACTCTCGACCCAGAACACTGCCGCCAAATCCTCCCCGACAGG CTGTTCGAACGGTGGGGCCTGGCGCTCGTTGACTCCGCAATCGACGCTTCCCAGAAGTTCTACTGCCCATATTCGGACTGTTCCGTTTTGTTCGTCTACG ACGCGGCCGCCGACGACTGTAAGAAGATGAAGGTTAGTCTGATCCGCCGGCTCTGGGAAGTCTTCCGCCGCGGTAACCGGCCGATTAATTATTATTGTGA GTGTCCGAGTTGCACGAGGGGGATGTGTTTGAAGTGCAAGTGTCCGTGGCATGAGACCATGGATTGCGAGACGTATGAGGCTTTGAACAGAGAAGGAGAG GAAAAGATGCTGGACTGGCTTGCTGGATTGAAGAAGTGGAGAAAGTGCCCTCATTGCAACTTCTACGTTGGAAAACGACGCTTTTACTGCAACTATGTTA AATGCAGGTGCGGAAAAGCATTTTGTTACGCGTGCGGTTCTCCTTACCGCAACGGGGTACATGTCAACACAACTATGACCCGTGGGTGTGTAAAACAACA CTAG
AA sequence Show only first row Show all	>Lus10022063 pacid=23160221 polypeptide=Lus10022063 locus=Lus10022063.g ID=Lus10022063.BGIv1.0 annot-version=v1.0 MGQLLTTLPSTENKDQPTTGKEANRSTAGPTFVCEICVETTPLRQSFNPKNCTHLYCNHCTVRYIETELSEKSSTRISCLEPGCQGTLDPEHCRQILPDR LFERWGLALVDSAIDASQKFYCPYSDCSVLFVYDAAADDCKKMKVSLIRRLWEVFRRGNRPINYYCECPSCTRGMCLKCKCPWHETMDCETYEALNREGE EKMLDWLAGLKKWRKCPHCNFYVGKRRFYCNYVKCRCGKAFCYACGSPYRNGVHVNTTMTRGCVKQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53690			RING/U-box superfamily protein...		Lus10022063 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	5.9	1.0000
					Lus10002009 [exp]	6.3	1.0000
					Lus10002449 [exp]	7.1	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	9.2	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	10.1	1.0000
					Lus10006079 [exp]	10.8	1.0000
AT1G14220			Ribonuclease T2 family protein...		Lus10015409 [exp]	13.0	1.0000
					Lus10025056 [exp]	13.1	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	14.2	1.0000
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	14.5	1.0000

Compare expression of checked genes

Lus10022063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.