Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14250 79 / 2e-18 RING/U-box superfamily protein (.1) AT3G53690 76 / 2e-17 RING/U-box superfamily protein (.1) AT4G19670 68 / 2e-14 RING/U-box superfamily protein (.1.2) AT2G26135 61 / 5e-12 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45580 59 / 3e-11 RING/U-box protein with C6HC-type zinc finger (.1) AT5G37560 58 / 9e-11 RING/U-box superfamily protein (.1) AT5G60250 58 / 9e-11 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G45470 56 / 1e-10 IBR domain containing protein (.1) AT3G43750 54 / 2e-09 RING/U-box protein with C6HC-type zinc finger domain (.1) AT3G45540 54 / 2e-09 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042610 [exp] 164 / 8e-51 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1) Lus10022063 [exp] 107 / 1e-29 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10026104 [exp] 79 / 2e-18 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10000412 [exp] 77 / 1e-17 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10024093 [exp] 70 / 3e-15 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10036202 [exp] 59 / 4e-11 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10038341 [exp] 58 / 9e-11 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036127 [exp] 55 / 8e-10 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036128 [exp] 54 / 2e-09 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064400 [exp] 85 / 2e-20 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 80 / 8e-19 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 78 / 4e-18 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 58 / 4e-11 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 58 / 6e-11 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G123500 [exp] 57 / 1e-10 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 56 / 2e-10 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.009G150100 [exp] 56 / 4e-10 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.017G050100 [exp] 50 / 5e-08 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.015G117600 [exp] 48 / 2e-07 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022064 pacid=23160277 polypeptide=Lus10022064 locus=Lus10022064.g ID=Lus10022064.BGIv1.0 annot-version=v1.0 ATGATTGCTATTCTGGATTGCTCTGTTTTGCTCATCAACGACGCCGCCGTCAACAAGTGTGCGTGTCCGAGCTGCAAGAGGGCGATTTGTGTGAAGTGCA AGTGTCCGTGGCATAAGAGGATGGATTGCAGGACGTACAAGGATTTGAAACGACAAGGAAAGCTGCAGGATAAGAAGCAGCTGGAGCGGCTTGCTGGATT GAAAAAGTGGAGGAAGTGCCCTCATTGCAATTTCTACGTTGGAAAAGACGATGGCTGCAGCTATGTTAAATGCAGGTGCGTACCGCATGTTCCTTCAAAA GGAAAACAAAAAGAAAAGAATTTCCAAATGGCTAGTGATTTTAGTGGGAACGAAGAATAA
AA sequence Show only first row Show all	>Lus10022064 pacid=23160277 polypeptide=Lus10022064 locus=Lus10022064.g ID=Lus10022064.BGIv1.0 annot-version=v1.0 MIAILDCSVLLINDAAVNKCACPSCKRAICVKCKCPWHKRMDCRTYKDLKRQGKLQDKKQLERLAGLKKWRKCPHCNFYVGKDDGCSYVKCRCVPHVPSK GKQKEKNFQMASDFSGNEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	2.6	0.9586
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	3.7	0.9586
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	4.6	0.9586
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	5.3	0.9586
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	5.9	0.9459
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	6.5	0.9326
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	8.8	0.9231
					Lus10013881 [exp]	8.9	0.9150
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	8.9	0.8848
					Lus10030782 [exp]	9.0	0.9053

Compare expression of checked genes

Lus10022064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.