Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48140 103 / 4e-28 EDA4 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT1G05450 94 / 2e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22620 64 / 3e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G48130 44 / 3e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22600 43 / 5e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042613 [exp] 214 / 7e-71 AT2G48140 107 / 1e-29 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10014683 [exp] 124 / 9e-34 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10006906 [exp] 117 / 2e-33 AT2G48140 119 / 1e-35 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10010575 [exp] 107 / 2e-28 AT1G05450 142 / 2e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10021911 [exp] 67 / 3e-13 AT1G05450 121 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10041196 [exp] 67 / 3e-13 AT1G05450 122 / 5e-35 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212000 [exp] 117 / 9e-33 AT2G48140 113 / 4e-32 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.002G050200 [exp] 105 / 7e-28 AT2G48140 127 / 1e-37 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.010G085200 [exp] 98 / 6e-25 AT1G05450 134 / 2e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.008G155200 [exp] 79 / 8e-18 AT2G48140 121 / 2e-34 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10022067 pacid=23160278 polypeptide=Lus10022067 locus=Lus10022067.g ID=Lus10022067.BGIv1.0 annot-version=v1.0 ATGATGGAATTGAAAGGACTCGTAATTACAATCATCTTCATAATTTGGTCGACCGCTGGTGTTTCAAAGGCGCAGATTACCACGCCGTGCACGACTTCCA TGGTCAGCAGCTTCACTCCTTGCATCAATTTCATCACCGGAAGCAGCAGCAACGGCACTACTTCGCCCACCACAGGATGCTGTGATGCTCTGAAGGAACT TGTTGCGGCCAGCATGGACTGCGCTTGCCTTGTCGTTACGGCCAATGTACCGATTCAGCTTCCCTTTGTTCCTCCTCTGTCCATCTCCCTCCCCAGGGCC TGCAAAATGGGAGTTCCCTTGCGCTGCAAAGCTTCGGTGTCTCCACTGGCAGCGCCGGGGCCTGCTCTGTTGCGGACTGCTACTGATGCACCTGCTCCTG CCCCACAATGTAGGAAATTAATTTGTTTGCTTTTCTTTGTCAAACTCAGAGTTCCAATTTTCCTGTGTTTTTTTGTGGCAGCAGCTTCAACCGCAGTAGC AGTAGACTCTCCGGCACCAGCTCCGGATTTAACGGCGACCCAGCCGGAAGAAGAAAACCGGACAACCACCGTCTGGGGGCGACCTTTTGTGAACATCTCT GCTTCTGTTGTGTCGCACGACGTGCCACATTGTGTGGCTTCTCTACTTTTCATAGCTGTGGCAATCCTACTCGCCGCACATTGA
AA sequence Show only first row Show all	>Lus10022067 pacid=23160278 polypeptide=Lus10022067 locus=Lus10022067.g ID=Lus10022067.BGIv1.0 annot-version=v1.0 MMELKGLVITIIFIIWSTAGVSKAQITTPCTTSMVSSFTPCINFITGSSSNGTTSPTTGCCDALKELVAASMDCACLVVTANVPIQLPFVPPLSISLPRA CKMGVPLRCKASVSPLAAPGPALLRTATDAPAPAPQCRKLICLLFFVKLRVPIFLCFFVAAASTAVAVDSPAPAPDLTATQPEEENRTTTVWGRPFVNIS ASVVSHDVPHCVASLLFIAVAILLAAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48140		EDA4	embryo sac development arrest ...		Lus10022067 [exp]	0	1
AT5G37690			SGNH hydrolase-type esterase s...		Lus10039877 [exp]	4.9	0.8795
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	13.4	0.8613
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	13.5	0.8765
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	13.6	0.7990
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	18.0	0.8771
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	21.6	0.8651
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	22.2	0.7843
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	24.5	0.8476
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	25.1	0.8664
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10001553 [exp]	31.9	0.8551

Compare expression of checked genes

Lus10022067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.