Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021525 [exp] 111 / 4e-30 ND 39 / 0.003 Lus10011617 [exp] 64 / 6e-14 ND / Lus10022540 [exp] 52 / 3e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022068 pacid=23160206 polypeptide=Lus10022068 locus=Lus10022068.g ID=Lus10022068.BGIv1.0 annot-version=v1.0 ATGCCGGCGACGGCTCAGCCGTCCCAGACGACTTTGAAGCCCCCTGATTCAATTCCTAGATCTTGCCGTCCCCGAACGACATCGTCCTCCCCATCAGAGG ATGTGACTCACCAGGATACATCCAATGATCGACCAATCCAGGATGATACAATGAACGAAACTCTGATTCTGAGAAACGCGTGGACTGGCCGATGCAATTC TCTATTTGAGACTAAAGTTGTGATAGATGATTGGTACGTGGCCGAGTCGGATTCAGAGGATGTAGGTGAAGCTATAAGAGAAGAGGATGATGTTCTAAAT GAGGAAGATGAGGATCCATTGTGCCTGTCAATCCCTTTCACTGCTGCGGAGAATACGAGTTTTCGTCGTGTATGGAGATCAGCTCTGGTGGTGCGAGGAT TAGGACGAAGGGTTCCATATCTTCATTTGGAATGTCGATCAAACTTTTATAGGCAAAGCAGGGTCCTCTACAAATCACTGATTTGA
AA sequence Show only first row Show all	>Lus10022068 pacid=23160206 polypeptide=Lus10022068 locus=Lus10022068.g ID=Lus10022068.BGIv1.0 annot-version=v1.0 MPATAQPSQTTLKPPDSIPRSCRPRTTSSSPSEDVTHQDTSNDRPIQDDTMNETLILRNAWTGRCNSLFETKVVIDDWYVAESDSEDVGEAIREEDDVLN EEDEDPLCLSIPFTAAENTSFRRVWRSALVVRGLGRRVPYLHLECRSNFYRQSRVLYKSLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022068 [exp]	0	1
					Lus10028673 [exp]	1.4	0.8961
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10014557 [exp]	5.2	0.9211
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10003652 [exp]	7.6	0.8215
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030911 [exp]	9.8	0.8803
					Lus10033534 [exp]	11.3	0.8803
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	12.6	0.8803
					Lus10039990 [exp]	13.9	0.8803
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	15.0	0.8803
AT1G43780		SCPL44	serine carboxypeptidase-like 4...		Lus10040330 [exp]	16.0	0.8803
					Lus10022805 [exp]	17.0	0.8803

Compare expression of checked genes

Lus10022068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.