Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23535 285 / 3e-100 KOW domain-containing protein (.1) AT5G54600 66 / 7e-14 Translation protein SH3-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042614 [exp] 314 / 1e-111 AT5G23535 286 / 6e-101 KOW domain-containing protein (.1) Lus10006905 [exp] 298 / 2e-105 AT5G23535 280 / 3e-98 KOW domain-containing protein (.1) Lus10014683 [exp] 159 / 2e-48 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10005180 [exp] 70 / 5e-15 AT5G54600 246 / 3e-83 Translation protein SH3-like family protein (.1.2) Lus10038125 [exp] 70 / 6e-15 AT5G54600 246 / 6e-83 Translation protein SH3-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062600 [exp] 301 / 1e-106 AT5G23535 254 / 6e-88 KOW domain-containing protein (.1) Potri.001G415400 [exp] 67 / 3e-14 AT5G54600 243 / 2e-82 Translation protein SH3-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10022069 pacid=23160212 polypeptide=Lus10022069 locus=Lus10022069.g ID=Lus10022069.BGIv1.0 annot-version=v1.0 ATGGGTTGGAAAGCAGCGGAAAAGCTTATTAGACATTGGAAAATACTCAGAGGAGATAATGTAATGATCATCAGAGGCAAGGATAAAGGTGAGACTGGCG TGGTCAAACGTGTAGTCCGCTCCCAGAATCGTGTCATTGTCGAGGGTAAAAATCTGGTTAAAAAGCACATAAAAGCAGGCGAAGGTCATGAAGGAGGAAT CTTTACCGTCGAAGCTCCACTTCATGCCTCAAATGTCCAAGTTGTCGATCCAGTCACAGGGAGACCTTGCAAGGTCGGAATTAAGTATCTGGAGGATGGT ACCAAAGTAAGAGTGTCAAGAGGTATAGGAGCATCTGAATCCATTATTCCACGTCCTCAGATTTTGAAGATAAGGACCACGCCAAGACCATCTATTGCTG GTCCGAAGGATACTCCGATTGATCTGGTACTGGAGAAGACATACGACTCCAAAACAGGGAAGGGCATGCCTGATCTTTGA
AA sequence Show only first row Show all	>Lus10022069 pacid=23160212 polypeptide=Lus10022069 locus=Lus10022069.g ID=Lus10022069.BGIv1.0 annot-version=v1.0 MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVVKRVVRSQNRVIVEGKNLVKKHIKAGEGHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGIKYLEDG TKVRVSRGIGASESIIPRPQILKIRTTPRPSIAGPKDTPIDLVLEKTYDSKTGKGMPDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23535			KOW domain-containing protein ...		Lus10022069 [exp]	0	1
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	2.0	0.9381
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10001335 [exp]	2.2	0.9355
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	3.5	0.9522
AT5G59850			Ribosomal protein S8 family pr...		Lus10029461 [exp]	6.0	0.9347
AT1G22780		RPS18A, PFL1, P...	40S RIBOSOMAL PROTEIN S18, POI...		Lus10042603 [exp]	6.5	0.9400
AT5G26800			unknown protein		Lus10011180 [exp]	6.7	0.9201
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	6.9	0.9394
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	6.9	0.9229
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	8.1	0.9242
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	8.2	0.9191

Compare expression of checked genes

Lus10022069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.