Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22640 204 / 3e-59 PAP85 cupin family protein (.1) AT2G28490 74 / 7e-14 RmlC-like cupins superfamily protein (.1) AT2G18540 71 / 1e-12 RmlC-like cupins superfamily protein (.1) AT4G36700 60 / 2e-09 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042615 [exp] 893 / 0 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10042617 [exp] 605 / 0 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10022072 [exp] 311 / 9e-104 AT3G22640 114 / 4e-29 cupin family protein (.1) Lus10011364 [exp] 98 / 1e-21 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 93 / 1e-19 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 93 / 2e-19 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10006420 [exp] 67 / 1e-11 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002500 [exp] 378 / 2e-126 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212266 [exp] 197 / 6e-59 AT3G22640 128 / 2e-33 cupin family protein (.1) Potri.005G212333 [exp] 167 / 4e-48 AT3G22640 76 / 2e-15 cupin family protein (.1) Potri.009G054700 [exp] 102 / 7e-23 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G029100 [exp] 94 / 4e-20 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10022070 pacid=23160231 polypeptide=Lus10022070 locus=Lus10022070.g ID=Lus10022070.BGIv1.0 annot-version=v1.0 ATGAGAGGTAGTAGTGTGGTAGTTTTTGTGCTTCTCTCTGTCCTGGCTCTCTGTTCAGCCAAGAAGGACGTGGAACTTGAGCAGTGCCAGGAGCTATGCA AGCAACAGCCGCAGTACGACGAGAAGCAGAAGGAGATCTGCCTCAAGGAATGCAAGGAATACGCTCGAAAGAAATCAGGCCGGGGAAGCGAAGAAACAGA CCCGGAGAAGAGGCTGGAGGAATGCAAGCACCAGTGCAAGCAGCATAAATTTTCCGACGAAGAGCAGAAAAAAGCTTGCAGGACCAAGTGCGACAAGCAG TACAAGGAAGGACGCGGCCGAATTGGGACCTACTACTACTACGAAGAAGAACAGGAAGAATCGAAAGGAGAGAATCCTTACGTTTTCACGGAGGAACATT TCGAGTCGAAATCCCAGAGCCAGCACGGAAGAGTTGATGTCCTCCGCAAGTTCACCGACAAATCGGAGCTCCTGAAGGGGATCGAGAATTTCAGGATTGG GTTCCTTGAAGCTAATCCGCAGACGTTTGTTCCTCCTGCCCACTTCGATGCTGATGGGGTTTTCTTTGTTGCCCAAGGAAGAGGAACGTTTACGATGATT GAAGGGAACAGAGGGCGCATGACGAGCAGCAGCGAGATTAAGAGGCACAGCTTCAACATTGAAGCTGGAGACGTGGTTAGGGTTTATGCTGGAAGTCCTG TTTACTTGGTGAACAAGCATGAAAGCCAGAAACTTGTGATCATCAAGTTCATCCGACCCGTCAACCTTCCTGGATCATTCGACGCATTCCATGGGCCAGG TGGCGAGAATCCTGAATCGTTCTTCAGAGCATTCAGCCCCGAGCTGCTTGCAGCTGCTTTCAAGGTGGACAAGCAGAGGATACAGAGGATCTTCCAACAA CAGGAGGGAGAGATCTTGAAAGCGACAAGAGAGCAGATTAGGGCACTGAGCCACGGCGAGGAAGGTGGAGGCATTTGGCCATTCGGAGGCGAATCTACTG GCCCTTTCAATCTTCTTCACAGGCGTCCTACTCAAAAGAACACCTTTGGCCAGCTGTGGGAAGCCGATCCCAACGAATTCGAGCAGTTCCGGGATCTCGA CCTCTTGGTCTCATTCGCCAACATCACTCAGGGAGCAATGGCTGGACCATTCTACAACTCGAAGGCCACAAAGATAGCCTATGTGGTGAATGGGGAAGGG TACTTCGAGATGGCCTGCCCTCATGTCACTAGTAGCTCTGGCGACATGGGCAGGCAGACCAGAGGTTCGCAGAGCCGTGGAGGCCAGAAATATGGTAAAG TACGTTCCCAGTTACGACGAGGAACTGTGTTCATCGTCCCGGCGGGTCACCCCGTCGTGACGGTGGCTTCTGCAAACAACAACCTCGAAGTGTTGTGCTT CGAGGTGAACGCACAGGGGAACTTCAGGTTCTCTCTGGCTGGAAAGGACAATGTGATGAGCAAGATGGAGAGCGAGGCTTTGGAGCTCGGGTTCGGGGCT CCAGCTAGAGAAGTGGAACAGATATTCAAGAACCGGAATGAGGAGTTCTTCTTCCCCGGACCGGAGTGGCAGAAACAGCAGCACAGTCGAGGGTATAGCT CTGCGTAA
AA sequence Show only first row Show all	>Lus10022070 pacid=23160231 polypeptide=Lus10022070 locus=Lus10022070.g ID=Lus10022070.BGIv1.0 annot-version=v1.0 MRGSSVVVFVLLSVLALCSAKKDVELEQCQELCKQQPQYDEKQKEICLKECKEYARKKSGRGSEETDPEKRLEECKHQCKQHKFSDEEQKKACRTKCDKQ YKEGRGRIGTYYYYEEEQEESKGENPYVFTEEHFESKSQSQHGRVDVLRKFTDKSELLKGIENFRIGFLEANPQTFVPPAHFDADGVFFVAQGRGTFTMI EGNRGRMTSSSEIKRHSFNIEAGDVVRVYAGSPVYLVNKHESQKLVIIKFIRPVNLPGSFDAFHGPGGENPESFFRAFSPELLAAAFKVDKQRIQRIFQQ QEGEILKATREQIRALSHGEEGGGIWPFGGESTGPFNLLHRRPTQKNTFGQLWEADPNEFEQFRDLDLLVSFANITQGAMAGPFYNSKATKIAYVVNGEG YFEMACPHVTSSSGDMGRQTRGSQSRGGQKYGKVRSQLRRGTVFIVPAGHPVVTVASANNNLEVLCFEVNAQGNFRFSLAGKDNVMSKMESEALELGFGA PAREVEQIFKNRNEEFFFPGPEWQKQQHSRGYSSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22640		PAP85	cupin family protein (.1)		Lus10022070 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10042310 [exp]	3.5	0.7716
					Lus10021816 [exp]	7.4	0.8073
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	17.1	0.7669
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	17.3	0.7752
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	17.6	0.7721
AT3G18150			RNI-like superfamily protein (...		Lus10029586 [exp]	20.4	0.7180
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	20.5	0.7702
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10032048 [exp]	23.9	0.7715
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10036312 [exp]	25.9	0.6733
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10033658 [exp]	28.2	0.7407

Compare expression of checked genes

Lus10022070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.