Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61750 223 / 7e-74 RmlC-like cupins superfamily protein (.1) AT1G02335 154 / 1e-46 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G38910 152 / 6e-46 RmlC-like cupins superfamily protein (.1) AT4G14630 150 / 2e-45 GLP9 germin-like protein 9 (.1) AT3G04200 148 / 2e-44 RmlC-like cupins superfamily protein (.1) AT1G10460 147 / 3e-44 GLP7 germin-like protein 7 (.1) AT5G39120 147 / 5e-44 RmlC-like cupins superfamily protein (.1) AT5G38940 145 / 2e-43 RmlC-like cupins superfamily protein (.1) AT5G38960 145 / 3e-43 RmlC-like cupins superfamily protein (.1) AT5G39150 144 / 7e-43 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042616 [exp] 384 / 4e-137 AT5G61750 226 / 3e-75 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 158 / 3e-48 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 157 / 4e-48 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 157 / 8e-48 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 154 / 1e-46 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 152 / 4e-46 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 152 / 5e-46 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10030047 [exp] 152 / 7e-46 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 154 / 1e-45 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109600 [exp] 268 / 1e-91 AT5G61750 225 / 6e-75 RmlC-like cupins superfamily protein (.1) Potri.012G111500 [exp] 252 / 3e-85 AT5G61750 201 / 2e-65 RmlC-like cupins superfamily protein (.1) Potri.013G051600 [exp] 153 / 1e-46 AT3G05950 296 / 1e-102 RmlC-like cupins superfamily protein (.1) Potri.013G051700 [exp] 152 / 7e-46 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Potri.009G140400 [exp] 147 / 3e-44 AT5G39110 247 / 3e-83 RmlC-like cupins superfamily protein (.1) Potri.009G140350 [exp] 147 / 3e-44 AT5G39110 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 147 / 4e-44 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163800 [exp] 145 / 1e-43 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 145 / 2e-43 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.014G110400 [exp] 145 / 2e-43 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10022071 pacid=23160238 polypeptide=Lus10022071 locus=Lus10022071.g ID=Lus10022071.BGIv1.0 annot-version=v1.0 ATGATGAGGATGACAAATTCAAATTCCTTCATGATCCTCTGCCTCTCCTTCTTCTGCATTCTGATCACACACTCCTGCAAATCAGACGAAACAAATCTCC AAGACACTTGCCCAACATCACCTCAAACAACAAAACAAACAATCTTCATCAACGGATACCCTTGCAAGAACCCCGCAAACGTCTCCGCCTCCGATTTCAA ATCCTCGAAACTCGACCGCCCCGGCAAAACAGACACCTTCCTCCGCTCTGCCCTGACACTCGCCACCGCATTCGACTTCCCTGGCCTGAACACCCTCGGC CTTTCCGTGGCCAGGACCGATCTCGATGTGGACGGTCTGCAGTTGCCTCATTCGCATCCGAGGGCGTCCGAGATTTTATTCGTCAGCCAAGGGGTGGTGC TCGTCGGGTTTGTGGATACCGAAAACAAGCTGTTTCAGAAGACTCTCAAGGCTGGAGATGTGTTTCTGTTTCCGAGGGCTTTGCTGCATTTCTGCTTAAA TGCTGGGTTTGAGAAAGCTCTGATTTTTTCCTTTCTGAATAGTCAAAACCCTGGACTCGTCACCATTGCCGACGCCATGTTCGTTCAAGATCGTGAACAA GATGCGATGATGGCGAAGCTTGTAAGCAGGATTAAATCTGCTGCCTCCATGGAGAAAAGTGGAGTCCTTGATACTTAG
AA sequence Show only first row Show all	>Lus10022071 pacid=23160238 polypeptide=Lus10022071 locus=Lus10022071.g ID=Lus10022071.BGIv1.0 annot-version=v1.0 MMRMTNSNSFMILCLSFFCILITHSCKSDETNLQDTCPTSPQTTKQTIFINGYPCKNPANVSASDFKSSKLDRPGKTDTFLRSALTLATAFDFPGLNTLG LSVARTDLDVDGLQLPHSHPRASEILFVSQGVVLVGFVDTENKLFQKTLKAGDVFLFPRALLHFCLNAGFEKALIFSFLNSQNPGLVTIADAMFVQDREQ DAMMAKLVSRIKSAASMEKSGVLDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	0	1
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	1.4	0.9946
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	2.4	0.9917
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	2.4	0.9878
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	2.8	0.9816
AT1G58070			unknown protein		Lus10019953 [exp]	4.5	0.9851
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	4.6	0.9834
AT3G57450			unknown protein		Lus10029496 [exp]	6.0	0.9628
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	7.4	0.9839
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	7.7	0.9837
AT1G10800			unknown protein		Lus10041270 [exp]	9.9	0.9802

Compare expression of checked genes

Lus10022071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.