Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22640 114 / 3e-29 PAP85 cupin family protein (.1) AT2G28490 74 / 5e-15 RmlC-like cupins superfamily protein (.1) AT2G18540 57 / 3e-09 RmlC-like cupins superfamily protein (.1) AT4G36700 42 / 0.0003 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042617 [exp] 410 / 1e-142 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10042615 [exp] 325 / 3e-109 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10022070 [exp] 311 / 9e-104 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10011364 [exp] 68 / 7e-13 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10006420 [exp] 66 / 5e-12 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 61 / 2e-10 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 59 / 7e-10 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002500 [exp] 218 / 1e-68 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212266 [exp] 115 / 2e-30 AT3G22640 128 / 2e-33 cupin family protein (.1) Potri.005G212333 [exp] 104 / 6e-27 AT3G22640 76 / 2e-15 cupin family protein (.1) Potri.009G054700 [exp] 76 / 1e-15 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G029100 [exp] 59 / 1e-09 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10022072 pacid=23160270 polypeptide=Lus10022072 locus=Lus10022072.g ID=Lus10022072.BGIv1.0 annot-version=v1.0 ATGCCTGGACACTATGATGCTGACGGTGTTCTCTTCGTTGCTCAAGGGAGAGGAACGTTTACAAGGATCCAGGAGAATAGAGGGGGACGAACCACCTCCA GCGAGATTAAGAGGCAGAGCTTCAATATTGAAACCGGAGATGTGTTCAGGAATCATGCTGGAACTCCTATTTACCTGGTCAACAAGGATGAGACCCAGAA CCTTATGATCATTGCACTCATCAGACCCGTCAACCTTCCTGGATCGTATGAGACATTCTTTGGACCGGGCGGCCAATTCCCAGAATCTTTCTTCAGAGCA TTCAGTCCGGAGCTGCTTGAAGCTGCTTTAAAGGTTCACAGAGAGAAGCTGCAGAGGATATTCCAACAGCAGGAGGGACCATTCCTGAAAGCTTCAAAAG AGCAAGTTAAGGCATTGAGCCCCGAAGACGAGGAAGGTGGAGGCATTTGGGCGTTTGGAAGTACTGAATTAAGCCGTGCTTTCAATCGCCCTACTCAAAG GAACAACTACGGCCAGTTGTGGGAAGCCAAGCCAGAAGACTTCGAGCAGTTTAAGGATCTAAACCTTACGGTCTCATTCGCCAACATCACTCGGAGAGCC ATGGCTGGACCATTCTACAACCCAAAGGCCACAAAGATAGCCTATGTGGTGGATGGCGAAGGTTACTTCGAAATGGCTCGCCCTCGTGTCGTCCCTAGTG GCTCTAGCGACATGGGAAGCCAAAGCCAGAGCCAATAG
AA sequence Show only first row Show all	>Lus10022072 pacid=23160270 polypeptide=Lus10022072 locus=Lus10022072.g ID=Lus10022072.BGIv1.0 annot-version=v1.0 MPGHYDADGVLFVAQGRGTFTRIQENRGGRTTSSEIKRQSFNIETGDVFRNHAGTPIYLVNKDETQNLMIIALIRPVNLPGSYETFFGPGGQFPESFFRA FSPELLEAALKVHREKLQRIFQQQEGPFLKASKEQVKALSPEDEEGGGIWAFGSTELSRAFNRPTQRNNYGQLWEAKPEDFEQFKDLNLTVSFANITRRA MAGPFYNPKATKIAYVVDGEGYFEMARPRVVPSGSSDMGSQSQSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	0	1
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	1.0	0.9729
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10008309 [exp]	1.4	0.9707
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	3.0	0.9689
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	3.5	0.9625
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	4.9	0.9614
					Lus10028069 [exp]	7.3	0.9529
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	7.4	0.9619
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10003362 [exp]	7.7	0.8726
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	9.4	0.9557
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020604 [exp]	9.6	0.9175

Compare expression of checked genes

Lus10022072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.