Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63210 56 / 6e-10 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT4G17670 54 / 1e-09 Protein of unknown function (DUF581) (.1) AT1G22160 53 / 1e-09 Protein of unknown function (DUF581) (.1) AT5G47060 51 / 1e-08 Protein of unknown function (DUF581) (.1) AT3G63230 49 / 2e-08 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT5G65040 49 / 2e-08 Protein of unknown function (DUF581) (.1) AT4G39795 49 / 3e-08 Protein of unknown function (DUF581) (.1) AT5G11460 50 / 6e-08 Protein of unknown function (DUF581) (.1) AT1G78020 49 / 9e-08 Protein of unknown function (DUF581) (.1) AT2G44670 46 / 3e-07 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042618 [exp] 176 / 5e-58 AT3G63210 45 / 3e-06 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 52 / 2e-09 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 51 / 4e-08 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 49 / 4e-08 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 49 / 1e-07 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 48 / 1e-07 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 48 / 2e-07 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 45 / 3e-06 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 44 / 1e-05 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050100 [exp] 80 / 3e-20 AT3G63230 59 / 3e-12 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) Potri.005G212500 [exp] 79 / 1e-19 AT3G63230 54 / 8e-10 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) Potri.005G168900 [exp] 55 / 3e-10 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 54 / 6e-10 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.014G052900 [exp] 51 / 4e-09 AT2G44670 88 / 2e-24 Protein of unknown function (DUF581) (.1) Potri.002G140300 [exp] 50 / 9e-09 AT2G44670 85 / 3e-23 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 51 / 1e-08 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 51 / 2e-08 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.001G148700 [exp] 50 / 2e-08 AT4G17670 142 / 5e-44 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 51 / 3e-08 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10022073 pacid=23160279 polypeptide=Lus10022073 locus=Lus10022073.g ID=Lus10022073.BGIv1.0 annot-version=v1.0 ATGGCCGGGAAGCGATCTCGCATCTCACAGTCTCCGAGCTTCGGCAACACTGGCGTCGTGCTCGACCGTCGACCGATCCAAGATCAGCATCAGCAGAAGC AGCGCTGGGAATCTCAGTTCACGGAGATCGGTAGTACTGCTGCGTCATCTCCCGATCACTCTCCTCAGGGGATTTTCGCCTTGTGTTCGATTCCGCCGCC CCTGCCATTGTCACCTCCTCCGGTGAGGAAGACTGACCGCGCTGATTCCACGGATCACTTTCTGGATCGGTGCTTCTATTGTAAGAAGAGATTGGATCAC GGACAGGACATCTACATGTACGGTGCGTTCTCTGCATTTTGTACATCTGAATGCCGTGACATGCAGTATGAAATCGACAAGAAGGGAGGCAATGCCAAGT AG
AA sequence Show only first row Show all	>Lus10022073 pacid=23160279 polypeptide=Lus10022073 locus=Lus10022073.g ID=Lus10022073.BGIv1.0 annot-version=v1.0 MAGKRSRISQSPSFGNTGVVLDRRPIQDQHQQKQRWESQFTEIGSTAASSPDHSPQGIFALCSIPPPLPLSPPPVRKTDRADSTDHFLDRCFYCKKRLDH GQDIYMYGAFSAFCTSECRDMQYEIDKKGGNAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022073 [exp]	0	1
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	1.7	0.9159
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	3.2	0.8975
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	5.7	0.8853
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	10.8	0.8837
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	11.8	0.8479
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	13.0	0.8724
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	17.3	0.8820
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	18.0	0.8391
AT3G08670			unknown protein		Lus10025209 [exp]	18.1	0.8467
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	20.5	0.8363

Compare expression of checked genes

Lus10022073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.