Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37440 297 / 2e-95 DNAse I-like superfamily protein (.1.2) AT2G32010 289 / 5e-91 CVL1 CVP2 like 1 (.1.2) AT3G63240 286 / 2e-90 DNAse I-like superfamily protein (.1) AT1G05470 283 / 2e-88 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G01900 229 / 5e-70 DNAse I-like superfamily protein (.1) AT5G04980 196 / 2e-57 DNAse I-like superfamily protein (.1.2) AT5G65090 192 / 1e-55 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT4G18010 166 / 7e-45 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G34120 164 / 2e-44 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 165 / 4e-44 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042619 [exp] 361 / 9e-118 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10006597 [exp] 308 / 4e-101 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10006904 [exp] 313 / 1e-100 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 284 / 1e-88 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10014684 [exp] 238 / 8e-70 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10031310 [exp] 213 / 1e-64 AT2G01900 320 / 3e-107 DNAse I-like superfamily protein (.1) Lus10042620 [exp] 200 / 4e-62 AT3G63240 118 / 2e-31 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 200 / 7e-58 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 187 / 6e-56 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212700 [exp] 301 / 3e-96 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 300 / 2e-95 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.002G050000 [exp] 296 / 4e-94 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 292 / 2e-92 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.012G041600 [exp] 233 / 8e-71 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.015G032200 [exp] 227 / 1e-68 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.010G101700 [exp] 217 / 6e-65 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G139600 [exp] 206 / 4e-61 AT2G01900 521 / 0.0 DNAse I-like superfamily protein (.1) Potri.007G090200 [exp] 200 / 1e-57 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 197 / 4e-57 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10022074 pacid=23160224 polypeptide=Lus10022074 locus=Lus10022074.g ID=Lus10022074.BGIv1.0 annot-version=v1.0 ATGAAGTTTTCGTGGCCCAAGACACTGGTCAAGAAATGGTTCAACATCAAGAGCAAAGCTGAGGAATTCCAAGCAGACAATGATGGTGATGAAGAAGGTG ACAGTGAATATAGAAGAAGGAACTTCATAGAGAAAGAGGTGATAGCATGCACCACCAAGAAAAGCAGAACAACAGAGAGGTTGAGCAAGAGAAGTTCTGA TCGAGTCAGGCAGAGTAAAATTGACTCTGATGCTGCTCAAGTTACAGAAGTTAACAATTATAGGGTTTTTGTAGCAACTTGGAATGTAGCTGGAAAATCT CCTCCAAGCTACTTGAGTCTTGAGGACTGGCTTCATACTTCACCTCCAGCTGACATTTACGTTCTTGGATTTCAAGAGATTGTTCCATTAAACGCCGGAA ACGTTCTAGGAACGGAGGACAACGGCCCTGCGAGAAAATGGTTGGATCTCATCAGAAAGGCTCTGAACAGCCTTCCCGGCGGGCACGAGGGGCGGGGGGG GCGGGGGGCGTCGAGGAGGTACTGTTTGGCGGCCAGCAAGCAGATGGTGGGAACTTTCTTGACGGTTTGGGTTAGGAGCAACCTTAGAGATGATGTGAAG AACATGAAGGTGTCCTGTGTTGGCAGAGGATTAATGGGTTATTTAGGCAACAAGAAGGAGGGGGATGAATTAAGGAGGAATTCTGATGTTATGGAGATCC TTAGGAAGACAAGGTTTCCAAGAGTTCATGGTATGGGAGATGAGAAATCTCCTCAGACAATTCTAGAGCATGATCGGATTATATGGTTAGGGGATTTGAA TTATCGAATTGCCTTGTCATACCGGTCTGTGAAGGCACTAGTAGAGATGCGCAACTGGAGGTTATTGTTACAGAATGACCAGGCATGTCTCCGGATGGAG AAGAGGCTAGGGAGAGTGTTTGAAGGATGGCATGAGGGGAGGATATACTTCCCTCCAACATACAAATACTTGAACAATTCGGATAGATACGCCGGTGATG ACAGGCACCCAAAAGAGAAGCGAAGAACTCCAGCTTGGGTTTTTGTAGCAACTTGGAATGTAGCTGGAAAATCTCCTCCAAGCTACTTGAGTCTTGAGGA CTGGCTTCATACTTCACCTCCAGCTGACATTTACGTTCTTGGGAGGAATTCTGATGTTATGGAGATCCTTAGGAAGACAAGGTTTCCAAGAGTTCATGGT ATGGGAGATGAGAAATCTCCTCAGACAATTCTAGAGCATGAGGGATTTGAATTATCGAATTGCCTTGTCATACCGGTCTGTGAAGGCACTAGTAGAGATG CGCAACTGGAGCTCCGGATGGAGAAGAGGCTAGGGAGAGTGTTTGAAGGATGGCATGAGGGGAGGATATACTTCCCTCCAACATACAAATACTTGAACAA TTCGGATAGATACGCCGGTGATGACAGGCACCCAAAAGAGAAGCGAAGAACTCCAGCTTGGTACTTTCATTTGAACCATAATAACTAG
AA sequence Show only first row Show all	>Lus10022074 pacid=23160224 polypeptide=Lus10022074 locus=Lus10022074.g ID=Lus10022074.BGIv1.0 annot-version=v1.0 MKFSWPKTLVKKWFNIKSKAEEFQADNDGDEEGDSEYRRRNFIEKEVIACTTKKSRTTERLSKRSSDRVRQSKIDSDAAQVTEVNNYRVFVATWNVAGKS PPSYLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLDLIRKALNSLPGGHEGRGGRGASRRYCLAASKQMVGTFLTVWVRSNLRDDVK NMKVSCVGRGLMGYLGNKKEGDELRRNSDVMEILRKTRFPRVHGMGDEKSPQTILEHDRIIWLGDLNYRIALSYRSVKALVEMRNWRLLLQNDQACLRME KRLGRVFEGWHEGRIYFPPTYKYLNNSDRYAGDDRHPKEKRRTPAWVFVATWNVAGKSPPSYLSLEDWLHTSPPADIYVLGRNSDVMEILRKTRFPRVHG MGDEKSPQTILEHEGFELSNCLVIPVCEGTSRDAQLELRMEKRLGRVFEGWHEGRIYFPPTYKYLNNSDRYAGDDRHPKEKRRTPAWYFHLNHNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	0	1
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	1.4	0.8027
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	1.4	0.7814
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	5.5	0.7613
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	9.5	0.7378
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10037023 [exp]	11.0	0.7033
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	11.5	0.7200
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	12.3	0.7349
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	13.7	0.7123
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10041492 [exp]	18.0	0.6799
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	18.2	0.7314

Compare expression of checked genes

Lus10022074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.