Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07130 135 / 4e-41 STN1, ATSTN1 Nucleic acid-binding, OB-fold-like protein (.1) AT2G24490 42 / 8e-05 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042621 [exp] 269 / 1e-93 AT1G07130 169 / 2e-54 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212900 [exp] 176 / 9e-57 AT1G07130 182 / 1e-59 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10022075 pacid=23160219 polypeptide=Lus10022075 locus=Lus10022075.g ID=Lus10022075.BGIv1.0 annot-version=v1.0 ATGGCGCAGAATCTTCAGATCACCCACGTAAAGCTCCTAGCTTTCGATCTCCATTCCCTGTCCCAAATCCCAACTTCTTCTTCCTCCTCTTCCTCCGATG CCTCCGTCTCCTTTGCTCGCCGTAGCGTTCCCGTCACCCGCGCCGAAATTCTCGGCACCGTTACCTTCCGCATCTCCAAACCTGGAAAGTTCCAAAGATT CTCCGTCGACGATGGCACTGGATACGTCCCCTGCATCCTCTGGCTCAACCACATGACCTCCCCTTACTTCTACCGCCGACGCCCACCAGATGTTCGACTA ATTGCCGATATGGCCAACGACGCTTCCCTTGTCAAGATAGAGGCAGTCGCCAGAATCCGCGGCAGGATCACTGGGTACAGAGGCGCGGTGCAGATTACAG TATCTGACGTTGTGGTTGAAAGAGACCCTAACATGGAAACTTTGCATTGGCTGGATTGCATCAGGCTGGCCCGCAAGTGCTACGACCCTATGGCTCTTTC TCGGAATTGA
AA sequence Show only first row Show all	>Lus10022075 pacid=23160219 polypeptide=Lus10022075 locus=Lus10022075.g ID=Lus10022075.BGIv1.0 annot-version=v1.0 MAQNLQITHVKLLAFDLHSLSQIPTSSSSSSSDASVSFARRSVPVTRAEILGTVTFRISKPGKFQRFSVDDGTGYVPCILWLNHMTSPYFYRRRPPDVRL IADMANDASLVKIEAVARIRGRITGYRGAVQITVSDVVVERDPNMETLHWLDCIRLARKCYDPMALSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Lus10022075 [exp]	0	1
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Lus10020394 [exp]	25.4	0.6643
					Lus10001095 [exp]	37.8	0.6308
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	58.2	0.6695
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10028130 [exp]	71.0	0.6378
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	121.4	0.5878
					Lus10039418 [exp]	170.7	0.6169

Compare expression of checked genes

Lus10022075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.