Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22750 546 / 0 Protein kinase superfamily protein (.1) AT4G14780 509 / 0 Protein kinase superfamily protein (.1) AT3G63260 472 / 2e-167 ATMRK1 Protein kinase superfamily protein (.1.2) AT3G01490 462 / 3e-163 Protein kinase superfamily protein (.1) AT5G50000 461 / 6e-163 Protein kinase superfamily protein (.1) AT4G31170 199 / 3e-60 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 186 / 4e-55 Protein kinase superfamily protein (.1) AT1G62400 177 / 2e-52 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 177 / 9e-51 Protein kinase superfamily protein (.1) AT3G46930 174 / 3e-50 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042622 [exp] 698 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 529 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 526 / 0 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 456 / 4e-161 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 454 / 3e-160 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 443 / 3e-155 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 226 / 8e-71 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 198 / 3e-60 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 194 / 5e-58 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213200 [exp] 594 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 593 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 557 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 552 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 474 / 4e-168 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 466 / 5e-165 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 459 / 2e-162 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 457 / 1e-161 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 197 / 3e-59 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 196 / 6e-59 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022076 pacid=23160222 polypeptide=Lus10022076 locus=Lus10022076.g ID=Lus10022076.BGIv1.0 annot-version=v1.0 ATGAACGGGAAAGCAGTTGAAGGAGCTGAAGTGAGGAGGTTGGTTTCCTACAAGGCTAATAATGAAGTGGGTGGTGGTGATGTGAGCAACAAGGAGATGT TCTTCCGAGCAGACAAGATTGATTTCAAGAGCTGGGATATACAGCTGGAGAAGCACCTCAGTAGGGCTTGGTCAAGGGATAGGGAAGTGGTGCAGTCCAA GAAGGAAGAGTGGGAGATTGATTTGGGGAAGCTTGATATTAGGCATGTCATAGCTCATGGCACTTATGGTACTGTTTACAGAGGCAACTACGATGGCCAA GATGTTGCTGTGAAAGTACTGGACTGGGGGGAGGATGGCATTGCTACCGCAGCTGAAACTGCTGCTCTTCGGTCATCTTTCCGGCAAGAAGTTGCTGTCT GGCACAAGCTTGATCATCCGAATGTTACAAAGGCACGAGCTTCAATGGGGACATCAAATCTAAAGATCCCTAATTCAAACGATGGCAACAATTCGATTCC TTCGCGGGCGTGTTGTGTGGTTGTCGAATACCTGCCAGGTGGGACGCTAAAGAAATTTCTAATCAGAAATAGGAGAAAGAAACTTGCGTTTAAGGTTGTG ATTCAACTTGCTTTGGACCTTTCTAGGGGTTTGAACTACCTTCACTCCAAGAAGATTGTGCATCGTGATGTGAAAACTGAGAACATGCTGCTAGATTCTC AGAGGACATTAAAAATTGCTGACTTCGGTGTTGCTCGAGTCGAAGCACAAAATCCACGGGATATGACTGGGGAAACCGGCACTCTTGGCTACATGGCTCC GGAGGTCCTGGATGGTAAACCATACAACCGGAAGTGCGATGTGTACAGTTTCGGAATATGCTTATGGGAAATCTATTGCTGTGACATGCCTTACCCCGAT CTTAGCTTTGCTGAGATATCCTCTGCTGTCGTTAGACAGCCGGATAAGCGACCGGAGATGGACGAGGTTGTGAGGCTACTAGAAGCCATCGATACGAGCA AAGGAGGCGGCATGATACCGGAGGACCAGTCTCGTGGCTGTTTCTGTTTCACTCCGATGCGTCGTGGCCCATGA
AA sequence Show only first row Show all	>Lus10022076 pacid=23160222 polypeptide=Lus10022076 locus=Lus10022076.g ID=Lus10022076.BGIv1.0 annot-version=v1.0 MNGKAVEGAEVRRLVSYKANNEVGGGDVSNKEMFFRADKIDFKSWDIQLEKHLSRAWSRDREVVQSKKEEWEIDLGKLDIRHVIAHGTYGTVYRGNYDGQ DVAVKVLDWGEDGIATAAETAALRSSFRQEVAVWHKLDHPNVTKARASMGTSNLKIPNSNDGNNSIPSRACCVVVEYLPGGTLKKFLIRNRRKKLAFKVV IQLALDLSRGLNYLHSKKIVHRDVKTENMLLDSQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPYPD LSFAEISSAVVRQPDKRPEMDEVVRLLEAIDTSKGGGMIPEDQSRGCFCFTPMRRGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	0	1
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	1.7	0.9152
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	2.0	0.8831
AT1G60420			DC1 domain-containing protein ...		Lus10005618 [exp]	3.9	0.8828
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	5.7	0.8680
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	7.5	0.8735
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10026084 [exp]	10.2	0.8809
AT1G65720			unknown protein		Lus10010961 [exp]	12.2	0.8815
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	12.7	0.8521
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10032757 [exp]	12.8	0.8578
AT3G27250			unknown protein		Lus10032077 [exp]	13.9	0.8539

Compare expression of checked genes

Lus10022076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.