Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03090 588 / 0 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT5G35360 161 / 3e-43 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G36160 67 / 2e-11 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 64 / 1e-10 ACC2 acetyl-CoA carboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042623 [exp] 898 / 0 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10017534 [exp] 164 / 2e-44 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 164 / 3e-44 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 164 / 6e-43 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 160 / 1e-42 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10024748 [exp] 68 / 1e-11 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10006934 [exp] 68 / 1e-11 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10042901 [exp] 52 / 6e-07 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213300 [exp] 654 / 0 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.006G078200 [exp] 164 / 3e-44 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.018G146300 [exp] 163 / 3e-44 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G169100 [exp] 67 / 2e-11 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 67 / 2e-11 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain
Representative CDS sequence Show only first row Show all	>Lus10022077 pacid=23160295 polypeptide=Lus10022077 locus=Lus10022077.g ID=Lus10022077.BGIv1.0 annot-version=v1.0 ATGATGCAGCCAAATGTTTCTCGTGACTTCCGCTCTCATTTGGGTGCGGCTGCTGTTTCTGCAGCCAAGGCTGTGGGTTACCACAATGCTGGGACTGTAG AGTTCATTGTGGACACACTCTCTGGGAATTTCTATTTTATGGAGATGAACACTCGTCTGCAGGTTGAGCATCCTGTGACTGAGATGGTTGTTGGACAAGA TCTTGTGGAATGGCAAATTCGTGTTGCAAATGGAGAACCATTGCCTATTAGTCAGTCAGAAGTACCATTATCTGGTCATGCCTTTGAAGCCAGAATTTAT GCTGAAAACGTCCCCAAGGGGTTCCTTCCTGCAACTGGAATTCTTCACCACTATAACCCTGTTCCAGCTTCATCGACAGCAGTGCGGGTTGAGACTGGAG TTGCACAGGGCGACACTGTTAGCATGCATTATGATCCAATGATTGCAAAGCTTGTAGTTTGGGGGGAACAGCGAGGTGCTGCATTAGTAAAACTGAGGGA TTCTTTATCTAGATTTCAGGTCGCTGGTGTACCAACCAATATCAGTTTTCTCCAAAAGCTTGCTAACCACAGGGAATTTGAAAATGGGAATGTGGAAACC CATTTCATTGAGCACCATAAAGACGATCTTTTTGTTGATTCAACCAATTCAGTGTTGGCAAAAGAAGCCCGTGATAAGGCCAAGTCCATTGCAGCCCTGG TAGCTGCATGTTTGTGTGAAAAGGATCATTGTGCAACAAGAGCGTACCTCCCTGGTTCACTCTCGTTATGGTATAAACATCCCCCTTTTAGAGTTCATCA TAATGCCACAAGGGCCATGGTATTTGAATGGGATAATGAATATGGTACTAGCAGCTCAAATCTCTTCACAGTTTCAACCACTTACCAGCAAGATGGGTCC TATTTCACCGAGTTGGGAGAAGTTGGTTCGGCTGGTCTGGAGGTGATAGCAAAACATCTAGAAAAGCTCAATTTTCGAGTTGAAGTTAATGGATCGACCA TGCATGTCAATTTGGCTACTTATGTTGAGGGTGGGACAGAGCACATTCATGTATGGCTTGGATCGGATCATTATCATTTCAAGCAAAAGTGTGGGCTTGA GTTGTCTGAAGAGGACAATACTCAACAGAAGACCGCTTTTGAGAATAAATCTCACCCGCCGGGAACTGTTGTTGCTCCAATGGCTGGATTAGTTGTCAAG GTTCTGTTGAGCAATGGAGCAAAGGTTGTTGAAGGGCAACCTGTGTTGGTCTTAGAGGCAATGAAAATGGAGCACATAGTGAAGTCACAGTCTTCTGGAT ATCTTCATGGACTTCAAGTTGGAGCTGGCCAACAGGTTTCCGATGGTAGCTTCCTCTTTGCCGTCAAGGTCAGTGATTTGATCTTTGAACTCACTTTGAG ACTTGGTTTAGAATTGAAAGTATTAGAACACATACCAAAAATGGGTTGTTTCTCCAATTGGATGATTGGTGATTTAACTGAGGAAGGTTCCCGACAAATC AAACTACAGTATGTGAATGAACTTATAATCAATGATCTTTGTGTTTGTTGA
AA sequence Show only first row Show all	>Lus10022077 pacid=23160295 polypeptide=Lus10022077 locus=Lus10022077.g ID=Lus10022077.BGIv1.0 annot-version=v1.0 MMQPNVSRDFRSHLGAAAVSAAKAVGYHNAGTVEFIVDTLSGNFYFMEMNTRLQVEHPVTEMVVGQDLVEWQIRVANGEPLPISQSEVPLSGHAFEARIY AENVPKGFLPATGILHHYNPVPASSTAVRVETGVAQGDTVSMHYDPMIAKLVVWGEQRGAALVKLRDSLSRFQVAGVPTNISFLQKLANHREFENGNVET HFIEHHKDDLFVDSTNSVLAKEARDKAKSIAALVAACLCEKDHCATRAYLPGSLSLWYKHPPFRVHHNATRAMVFEWDNEYGTSSSNLFTVSTTYQQDGS YFTELGEVGSAGLEVIAKHLEKLNFRVEVNGSTMHVNLATYVEGGTEHIHVWLGSDHYHFKQKCGLELSEEDNTQQKTAFENKSHPPGTVVAPMAGLVVK VLLSNGAKVVEGQPVLVLEAMKMEHIVKSQSSGYLHGLQVGAGQQVSDGSFLFAVKVSDLIFELTLRLGLELKVLEHIPKMGCFSNWMIGDLTEEGSRQI KLQYVNELIINDLCVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022077 [exp]	0	1
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	2.4	0.8558
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	2.8	0.8638
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10009737 [exp]	4.5	0.8371
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	5.1	0.8580
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10027276 [exp]	6.3	0.8399
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	6.7	0.8173
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	8.1	0.8312
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	12.3	0.8266
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	13.5	0.8299
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10027861 [exp]	17.3	0.8212

Compare expression of checked genes

Lus10022077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.