Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03090 404 / 2e-137 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT5G35360 236 / 1e-74 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G36160 134 / 2e-35 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 130 / 6e-34 ACC2 acetyl-CoA carboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042623 [exp] 521 / 0 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10028196 [exp] 239 / 3e-75 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017534 [exp] 233 / 3e-73 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 229 / 7e-72 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 227 / 4e-68 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042901 [exp] 206 / 1e-63 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028199 [exp] 166 / 2e-51 AT5G35360 296 / 1e-99 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10006934 [exp] 125 / 4e-32 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024748 [exp] 123 / 2e-31 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G213300 [exp] 445 / 3e-153 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.018G146300 [exp] 237 / 7e-75 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 234 / 1e-73 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G169100 [exp] 132 / 9e-35 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 132 / 1e-34 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022078 pacid=23160271 polypeptide=Lus10022078 locus=Lus10022078.g ID=Lus10022078.BGIv1.0 annot-version=v1.0 ATGGCGTCCATGGCGTCGGTTCTCCGGCGTAAGTTCCGTGTGCAGCCGTTTACCTTTCAGTTTCGTTTCTTCTCCGCCGAGTCGCCTTTTCACAGCGGGA AAACGGCACAACAGCAACCGATACAGAAGATTCTGATCGCCAACAGAGGAGAGATTGCTTGCAGGATAATGAGGACTGCCAAGCGTCTAGGCGTGGGAAC AGTTGCGGTTTACAGCGACGCTGATAAGGATTCTCTTCATGTGAAATCTGCTGATGAGGCCGTTCGTTTAGGTCCCCCTCCAGCTCGGCTCAGTTATTTG AACGGATCGTCGATTGTGGAGGCTGCAATTCGTACTGGCGCTCAGGCTATCCACCCTGGGTATGGATTCTTATCAGAAAGCTCTGAATTTGCTAAGCTTT GCGAAGATAAGGGTCTTACGTTTGTTGGCCCTCCGGCGTCAGCTATACAGGACATGGGTGATAAAAGTGCATCAAAGAGGATAATGGGTGCAGCAGGGGT GCCACTTGTACCGGGTTATCATGGTAGCAATCAGGATATCGAGTTCATGAAGTCAGAAGCAGATAAGATTGGGTATCCAGTCTTAATAAAGCCAACTCAT GGAGGTGGAGGAAAGGGCATGAGGATAGTGGGAACTCCAGATGAATTTGTTGATGCCTTCCTTGGGGCACAGCGTGAAGCTGCTGCTTCCTTTGGTATAT TCGGGGACAAACTTGGCAATGTACTGCATTTATATGAACGGGACTGCAGCGTGCAAAGGAGACATCAGAAGATTATTGAAGAAGCCCCTGCTGTAACGTC TGCTTATGAGATTTAA
AA sequence Show only first row Show all	>Lus10022078 pacid=23160271 polypeptide=Lus10022078 locus=Lus10022078.g ID=Lus10022078.BGIv1.0 annot-version=v1.0 MASMASVLRRKFRVQPFTFQFRFFSAESPFHSGKTAQQQPIQKILIANRGEIACRIMRTAKRLGVGTVAVYSDADKDSLHVKSADEAVRLGPPPARLSYL NGSSIVEAAIRTGAQAIHPGYGFLSESSEFAKLCEDKGLTFVGPPASAIQDMGDKSASKRIMGAAGVPLVPGYHGSNQDIEFMKSEADKIGYPVLIKPTH GGGGKGMRIVGTPDEFVDAFLGAQREAAASFGIFGDKLGNVLHLYERDCSVQRRHQKIIEEAPAVTSAYEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	0	1
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	4.5	0.8535
AT5G15270			RNA-binding KH domain-containi...		Lus10017596 [exp]	4.6	0.8209
					Lus10001309 [exp]	5.2	0.8677
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	6.6	0.8310
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	7.7	0.8445
AT1G06510			unknown protein		Lus10001505 [exp]	10.2	0.8434
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	11.5	0.8554
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	12.2	0.8177
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025094 [exp]	12.5	0.8307
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	12.5	0.8161

Compare expression of checked genes

Lus10022078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.