Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03080 1043 / 0 kinase interacting (KIP1-like) family protein (.1) AT3G22790 696 / 0 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 624 / 0 kinase interacting (KIP1-like) family protein (.1) AT4G02710 493 / 2e-150 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 100 / 3e-21 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G58210 97 / 8e-20 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT5G58320 94 / 2e-19 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT2G22560 92 / 3e-18 Kinase interacting (KIP1-like) family protein (.1) AT1G03470 85 / 2e-17 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G10500 87 / 1e-16 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014687 [exp] 1205 / 0 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 1167 / 0 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 984 / 0 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 805 / 0 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 306 / 2e-84 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 300 / 3e-82 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006606 [exp] 191 / 3e-50 AT3G22790 368 / 3e-111 Kinase interacting (KIP1-like) family protein (.1) Lus10034448 [exp] 102 / 6e-22 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10019111 [exp] 102 / 6e-22 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049600 [exp] 1560 / 0 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 885 / 0 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 437 / 5e-126 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 403 / 2e-124 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156200 [exp] 282 / 3e-77 AT3G22790 762 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 103 / 3e-22 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 99 / 7e-21 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.007G011300 [exp] 94 / 1e-18 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 90 / 9e-18 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.002G207700 [exp] 87 / 3e-17 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10022079 pacid=23160274 polypeptide=Lus10022079 locus=Lus10022079.g ID=Lus10022079.BGIv1.0 annot-version=v1.0 ATGGATTCCAACGTAGCGAAGATGATCAAGCTCATTGAAGAAGATGCCGATTCATTTGCAAGGAGGGCAGAAATGTATTATAAGAAACGTCCAGAGCTAA TGAAATTGGTTGAAGAGTTCTACAGAGCATACCGTGCATTGGCTGAAAGATATGATCATGCAACTGGAGTTATCCGTCAGGCTCACAAGGATAAATTTGG GATAAGTGACGATTCTCCAGCAAGTGCTGTTGCTGACGGTGAGCCCCGTACACCTGATCTTCCATCCATCCGTGCATTTATGGATCAGGATGAGTTGGAA AAGGATGATTTCGGAGTCTCCCCGTCACACTTTTATACTGCAAAGAGAAGTGGTACCCTCATGGACGAAGCTGATTCTGTTATCAGCAAAAAGGGTCCTA AACATTTCAACGACTTGTTTGGTTCCGGCGATGGGATGGGAAGAGCAAGGAAGGGGCTTAATTTTCAGGATTCGGGAGAGAGAGAACGAGGAGGCAAAAT CAATGGTAGTGATGACGGCAGATCTCAGGTTCCATATGATTCAGACCGAATGGTCAAAGCTGAGCAAGAAATTTTGACCTTGAAGAATGCTCTTGCTACA TTAGAAGCTGAAAAGGAAGCTGATCTACGCCAGTACCAACAAAGTATGGAAAAGTTGACCAGTCTAGAGTCGGAAGTATCTCGTGCAAAAGAAGATTCTT TTGGACTCGTTGACCGAGCTATTAAAGCTGAAGAAGAAGCCCAAACTTTGAAGGAGAACCTTGTCAAGCTAGAGGTTGAGAGGGAAACCAATTTTCTTCA ATACCAGCAGTGTCAGGATAAAATATCTAACCTAGAGAAGAATGCATCTCTTGCTGAGCAGAATACGGTAGAGATAATTGAGCGAGCTACTAAAGCTGAA ACTGAAGCTCTATCACTAAAAGAAGATCTCGCTAAGTTAGATGCTGAAAAGGAAGCTGCTCTTGTTCAGTATGCACAATGCCTGGAGAGGATCTCTGACA TGGAGAGCAAGTTACTGCAAGCTGAGGAAGATGCTCGGACTTTTAGAAAGCGTGCAGAAAAGGCTGAAGAGGAAGTTGAAAGCTTGAAGCAGGCGTCAGC AAAGCTAGCTGAAGAGAATGAAGCTACCGCACTTCGCTTCCAGCAGTGTCTTGATACAATACAAAGTCTAGAGCATAAGCTTGCTTGCGCTGAGGAGGAG ACCCGAAGGCTAAGCTCTTTGATAGACGATGGGAATTCCAAGTTGAAGGGTGCCGAAGAAAAGTGTATGGTGTTGGAGAGATCTAATGAGGCCATGCATG TCGACCTGGAAGCTCTTGCACAGAAAATGGCTGCTCAAAATGAGGAACTTACAGAAAAGCAGAAGGAACTGAGCAGGCTTTGGACTTGTGTGCAAGAAGA ACATTTGAGGTTTGTTGAGGCCGAGACTGCTTTTCAAACTCTGCAAAACTTACATTCTCAATCTCAGGACGAACTGAGGTCTTTGGATGCAGAGCTTCAG AAAAGGATTCAGATTTTAGAGGACCTTGAAGCTCGTAACAATAATCTACAAACCGAAGTTCGGCAGGTAAAGCTTGAGAACAAGAGCCTGGGCGAAGTCA ACTTATCTTCTGCTCTCGCAATACAGGACTTACAGGGTGAGATGTCCAGCTTAAGACAGCTGATAGAGAAACTTGAAGCAGAGATTCAACTTCGTGTCGA CCAAAGAAATGCCCTTCAGCAGGAAATTTACTGCCTAAAAGAGGAACTGAATGGCATTAGCAAGAATCATCAGACTGTCATAGAGCAGCTTGAATCTGTT GGATTGCACCCAGAGAGCTTGAGCTCGTCTGTAAAGGATATGAAGGATGACAATGCAAAACTGAAAGAGGCATGCGAGAGCTTAAGCTCGTCTGTTAAGG ATATGCAGGATGACAATGAAAAACTGAAAGAGGCATGGGAGAGCAGCAAAAGTGAGAAATTAGCACTTCTGGAGAAGTTGGTGGCCATGGAGAAGCTTAT GGAGCAAAATGCTTTCTTGGAGAATTCCTTGTCAGATCTGAATGTGGAGCTAGATGGAGCCAGGAAGATGGTGAAGAACTTGGAAGAAACGTGTCAGTCT CTTGTGGGAGAGAACTGTACTCTCATCTCTGAGAAGGCTGCATTGATCTCCCAGTTAGAGACTGTAACTAATGATTCGGAGAAGCTCATGGAGAGAAACA ACATTCTTGAGACATCCCTCCTTGATGCAAATTCTGAACTTGATAGGCTAAGAGGAAAAACAAATAACTTGGAAGCATTATGTCTGTTGCTCGAGAATCA GAAATCTGACTTGGCAACTTTGAGAGCAAGTTTAACTTCTCAGTTGGAAGTCACTCAGAAAAGGCTGGAGGATTTGGACAGAAGTCATGGAAGCTTGGAA GAGAGACATTCAAGTCTTGAGAATGAGAAACAATCCATACTTCTTGAAGTAAAGGAACTGCAGGTCTGTTTGGAAACTGAAAAGCAAGAACATGGTTTGC TTGCACAGCAAAGTGAGTCCCAGATGGCCAGTATGACATCACAGATCAATTTACTACATGAAGAAACACAGCGCACAAAGAAAGTTCACGAAGAGGAACT TGACAAAGCTATTACTGCCCAGATTGAGATCTTTGTCTTGCAGAAATGCATCCACGATCTGGAAGAGAATAATTCTTCCCTTTTGCTAGAGTGCAAAAAC CTCTTGGGCGCAACTAAATGTTCAGAGGAACAAATTTCAAAACTTGAGCATGAAAAACACGAGCTAAAGAAGGAAGTCAAATGTTTAGACAATCAACTTG AAACACTGAGGGTGGGACTTCACAGGACATCAAAGCTTCTTGGACTCGACATAAACTTGGGGCAAAACGATGAGAATGCACTAGTGAACCAATTGGTGAA CAAGATTGAAGAAATTCAAGAGCTTCAATCTAAGATGCTGGATGAAAACCAGCTGCTATCCGTTGAGAAATCTGTTATTTGTACATTGCTTGCAGAACTG CAGGCTGAAGTTGCAAATCTTGTGATGAATAACAACAGTCTTGATATGAAATTGAAAACCAGTGGCGAGCAGCTTCTGATTTTAAAGAGTGCGAGCCAAG AACTTGCCGAGTTGAACGACCAGTTAAGGTTAAAGGCTAACGAAGGGGAGCACAAAGAAGGAGTCTTGAGGGCTGAACTAAATGTTCAGCATGCACAGCT ATCAGACTTACGAGAAGCCTGCAAGAAGTTAGAGCAAGAGAACTGCAACCTATCTACCAATTACAAGTGCCTAATGAAGTCATTTACAGACTTGGGAGAA GATAAATCCAGCTTGGAGGAGGAAATGTGCGCAGTTTTCGCTCAGACGGTATCTCAAAGTACCTTGTCTCTAGTTTTCAAGAATGTCATCGACGAGAAGT TTCTTGAGATAAAGGTACTTTGTGAAAATATTGATAAAGTACACCATGCCAATAATGCTCTCAAAGAGACGGTAAAGACATTGGAGGGAAAATTGGATCA GCTTGCAATTCTAAAGAATGAGAAAGAGAAATTGCACAATGAGCTGGAAGAATTGAAGTCCAAGTATGTCCAAGTTGAGTTGATACGAGCAAGTCAGGAA AATCAGCTCATTAATCTGTCCGAGGACTATGATCAACAGAGCAAGGAGGTGAACAGCATTCGTGGCGTGAAAGATATGGTAGAGAGTGAACTGTGCAAAC TACGTCTGGAGTTGGTAGACATGAAGTCTAAGTATGAAAAGGTCGAGGTGATACGAGCGAGTCAGGAAAAGAAGCTCACCAATCTGTCCGAAGACTACGA TCAACAGAGCAGGGAGGTCAACAGCATCCGTGACGCGAAAGATGAGGCGGAAAGTGAACTGTGCAAAATACGGGGGGAGTTGGCGGAAAGTATGAATAGG GAGATCACTGTAAATAATGAGTTGAGGAAAGCAACAAATGATGCTGAACTGTGGGAGTCTCAGGCTGCTATCTCACTGGGTGAGCTGCAGGTCTCTGCTA TACGAGAGGGGTTGTTTGTATGTAAGATTCATGAGCTTATCGAAGCTTGCCAGAGCTTTGAAGAGAGATTGCTCTCCAGAGATACGGACATAGGGGAACT GAAGGAAAGAGCGAGCACCTTAGAAAGTGCAAATGGGGATCTTAAATGCAAAATGAGTGCATGCATCCCTGCCTTCCTTTCTTTGATGGATTCTATCAAA TCCCTGGAAAAGCATGTTCTTTCACATGCAACAGTTCCTGGAATCGAGAAACATCAATCAGAGGATGCTGAATCAGAGTTGCAAGAGATATCATTTGAGG AAACGCAAGAAGATCAGACTGCAATGTTTATGGACCTACAAGAATTACACAAAAGAATAAGAGCAGTTGAAAACGCAGTTAAGGAAAAGGAAAGACTAGT CATGCTTGAAAGCACAGCTGCTAATAGCAAGCTTCTGGCTGCAACGAGAGAAATTGAAGACTTAAAATCTCGAACCAGCTTCGAAGTTGAAGGTAGCGTA AGAGGTAACACTGTTAATCACAAAGCCGGGAAGAAAGACCTCATCTTGCAGAGACAACAAACACATGAAATTACGGAAGAAGGGAGCGAAGTGATGACAA AGGACATAATACTCGATCAGGTCTCTGATTGTTCGTCGTATAGAATCATGAGCAGAAGGAATGCTGCCAAGACTGACGATTCAATGCTCGAAATCTGGGA AGCAGCTGATCTGGAAGGCAGCATTGACATGACCGTTGAAAAAACTCGCGAAGGCATTTCTGCATCAGGTAGAAAGAAACACAACCGCGACAATCCCTCG GCAGAGTCACTGTTTGAGAGAGAGGTTTCCATGGACAAACTAGAGAGCTCCAGGAGACTCTCAGGGTCTTCTCAAGAAGCAAACGGGAGAAAGATTCTGG AAAGACTGGATTCCGACATGCAAAAGCTGACAGACCTTCAGAAAGTCGTTCAAGACTTGAAGAGGAAGGTAGAGGTTGATAAGAAGACAAAGAAGGGCAA AGGAATTGAATTCGACACTGTGAAGGAGCAGTTGGATGAACAAGAGGACGACATCATGAAGCGGCTCGAAATGAACCGCAAGCTGACCAAGAGAATTGAA ACCGATTCGCCGTCCGAAACCGAGTCGCCTTCCTTGATCTTGGACGAGAAAGCAAGTGCCAGCAGGAAGAAAATCTCAGACCAAGCAAGAAGGGAATCGG AGAAAATCGGACGATTGCATTTGGAGCTGCAGAAATTACAGCGTCTTCTGCTAAAGCAAGCTCCGGAGCGTACAACTAGCGTCCTGCTGCGTGATTATCT ATATGGTGGTGGGGAGACGGTCCCTAATACCCCGAAAAAGAAGAAGTCGCATTTCTGTTCTTGTATGCATCAGCCTGTGACAAGAGGAGATTGA
AA sequence Show only first row Show all	>Lus10022079 pacid=23160274 polypeptide=Lus10022079 locus=Lus10022079.g ID=Lus10022079.BGIv1.0 annot-version=v1.0 MDSNVAKMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHKDKFGISDDSPASAVADGEPRTPDLPSIRAFMDQDELE KDDFGVSPSHFYTAKRSGTLMDEADSVISKKGPKHFNDLFGSGDGMGRARKGLNFQDSGERERGGKINGSDDGRSQVPYDSDRMVKAEQEILTLKNALAT LEAEKEADLRQYQQSMEKLTSLESEVSRAKEDSFGLVDRAIKAEEEAQTLKENLVKLEVERETNFLQYQQCQDKISNLEKNASLAEQNTVEIIERATKAE TEALSLKEDLAKLDAEKEAALVQYAQCLERISDMESKLLQAEEDARTFRKRAEKAEEEVESLKQASAKLAEENEATALRFQQCLDTIQSLEHKLACAEEE TRRLSSLIDDGNSKLKGAEEKCMVLERSNEAMHVDLEALAQKMAAQNEELTEKQKELSRLWTCVQEEHLRFVEAETAFQTLQNLHSQSQDELRSLDAELQ KRIQILEDLEARNNNLQTEVRQVKLENKSLGEVNLSSALAIQDLQGEMSSLRQLIEKLEAEIQLRVDQRNALQQEIYCLKEELNGISKNHQTVIEQLESV GLHPESLSSSVKDMKDDNAKLKEACESLSSSVKDMQDDNEKLKEAWESSKSEKLALLEKLVAMEKLMEQNAFLENSLSDLNVELDGARKMVKNLEETCQS LVGENCTLISEKAALISQLETVTNDSEKLMERNNILETSLLDANSELDRLRGKTNNLEALCLLLENQKSDLATLRASLTSQLEVTQKRLEDLDRSHGSLE ERHSSLENEKQSILLEVKELQVCLETEKQEHGLLAQQSESQMASMTSQINLLHEETQRTKKVHEEELDKAITAQIEIFVLQKCIHDLEENNSSLLLECKN LLGATKCSEEQISKLEHEKHELKKEVKCLDNQLETLRVGLHRTSKLLGLDINLGQNDENALVNQLVNKIEEIQELQSKMLDENQLLSVEKSVICTLLAEL QAEVANLVMNNNSLDMKLKTSGEQLLILKSASQELAELNDQLRLKANEGEHKEGVLRAELNVQHAQLSDLREACKKLEQENCNLSTNYKCLMKSFTDLGE DKSSLEEEMCAVFAQTVSQSTLSLVFKNVIDEKFLEIKVLCENIDKVHHANNALKETVKTLEGKLDQLAILKNEKEKLHNELEELKSKYVQVELIRASQE NQLINLSEDYDQQSKEVNSIRGVKDMVESELCKLRLELVDMKSKYEKVEVIRASQEKKLTNLSEDYDQQSREVNSIRDAKDEAESELCKIRGELAESMNR EITVNNELRKATNDAELWESQAAISLGELQVSAIREGLFVCKIHELIEACQSFEERLLSRDTDIGELKERASTLESANGDLKCKMSACIPAFLSLMDSIK SLEKHVLSHATVPGIEKHQSEDAESELQEISFEETQEDQTAMFMDLQELHKRIRAVENAVKEKERLVMLESTAANSKLLAATREIEDLKSRTSFEVEGSV RGNTVNHKAGKKDLILQRQQTHEITEEGSEVMTKDIILDQVSDCSSYRIMSRRNAAKTDDSMLEIWEAADLEGSIDMTVEKTREGISASGRKKHNRDNPS AESLFEREVSMDKLESSRRLSGSSQEANGRKILERLDSDMQKLTDLQKVVQDLKRKVEVDKKTKKGKGIEFDTVKEQLDEQEDDIMKRLEMNRKLTKRIE TDSPSETESPSLILDEKASASRKKISDQARRESEKIGRLHLELQKLQRLLLKQAPERTTSVLLRDYLYGGGETVPNTPKKKKSHFCSCMHQPVTRGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03080			kinase interacting (KIP1-like)...		Lus10022079 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	1.7	0.9094
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	2.4	0.8630
AT5G28850			Calcium-binding EF-hand family...		Lus10027963 [exp]	4.0	0.8580
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	4.0	0.8367
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	4.6	0.8610
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	4.9	0.8461
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	14.1	0.8232
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	15.5	0.8189
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	15.8	0.8474
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	18.3	0.8423

Compare expression of checked genes

Lus10022079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.