Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02670 262 / 1e-86 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT1G03840 265 / 2e-86 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT3G50700 262 / 6e-86 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 255 / 2e-83 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT5G44160 256 / 3e-83 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G13810 256 / 7e-83 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT5G66730 255 / 1e-82 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT2G02080 255 / 1e-82 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT5G03150 254 / 3e-82 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G14580 251 / 2e-81 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042626 [exp] 391 / 8e-138 AT1G03840 265 / 3e-85 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10039869 [exp] 257 / 2e-87 AT1G03840 304 / 1e-102 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10010820 [exp] 259 / 7e-87 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10004497 [exp] 263 / 5e-86 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10007168 [exp] 263 / 2e-85 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 260 / 8e-85 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 259 / 1e-84 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10029904 [exp] 255 / 4e-83 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 257 / 6e-83 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048000 [exp] 275 / 9e-91 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.005G215100 [exp] 274 / 2e-90 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.017G017100 [exp] 266 / 3e-87 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 265 / 8e-87 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G028800 [exp] 264 / 7e-86 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G125600 [exp] 263 / 2e-85 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.006G129300 [exp] 261 / 7e-85 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.008G142500 [exp] 258 / 2e-83 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1) Potri.016G088500 [exp] 257 / 2e-83 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 258 / 4e-83 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022080 pacid=23160305 polypeptide=Lus10022080 locus=Lus10022080.g ID=Lus10022080.BGIv1.0 annot-version=v1.0 ATGTTCCCTGGTCATGCCATGTTCAACAATTCAGCAGCTTCTTTCTCTGAAGAAGAAGATGAAGAAGATCATGCTAGACTACTACTTGTCCCTCCTCACC ACCATCAAGCAGCAGACAACTTCTTCAATAATCTTATCACCAACCACCAGCCCGCACCATCCTCGACTCTATTCTTTCCCAACTCGGCCACAGTCGTCCT CCCCGATACTTCTCTCCCGCCCGCCAAGGCCAAGAAGAAACGCAGCCTCCCCGACCCGGAAGCGGAGGTGATAGCGTTATCACCAAAGGCGCTGCTAGCG ACCAACAGATTCGTATGCGAGATATGCAAGAAGGGGTTTCAGAGGGACCAAAACCTCCAGCTCCACCGTAGAGGACACAACCTGCCGTGGAAGCTCAAGC AGCGAAACCACAACAAGGAGGAGCCTATCAAGAAGAAGGCCTACGTCTGTCCCGAGCCGAGCTGCGTCCACCACCACCCTTCCAGAGCTCTCGGAGACCT CACGGGGATTAAAAAGCACTACTGCAGGAAACACGGTGAGAAGAAGTGGAAGTGCGAGAAATGCTCGAAAATCTACGCCGTCCATTCGGACTGGAAGGCT CATTCCAAGACTTGCGGCACTAGGGAGTACCGATGTGACTGTGGCACCCTTTTCTCTAGGTACGTATGCATGTCTATATCCCACAATTTTTCCCTTTCGA ATTAA
AA sequence Show only first row Show all	>Lus10022080 pacid=23160305 polypeptide=Lus10022080 locus=Lus10022080.g ID=Lus10022080.BGIv1.0 annot-version=v1.0 MFPGHAMFNNSAASFSEEEDEEDHARLLLVPPHHHQAADNFFNNLITNHQPAPSSTLFFPNSATVVLPDTSLPPAKAKKKRSLPDPEAEVIALSPKALLA TNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRNHNKEEPIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVHSDWKA HSKTCGTREYRCDCGTLFSRYVCMSISHNFSLSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	0	1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	3.3	0.9149
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10014375 [exp]	3.5	0.8219
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	4.0	0.8727
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	5.5	0.8065
AT5G41620			unknown protein		Lus10028746 [exp]	5.7	0.8046
AT2G40070			unknown protein		Lus10030402 [exp]	7.7	0.8487
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	14.8	0.8843
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	17.0	0.8744
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10002924 [exp]	17.5	0.7475
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	24.9	0.8708

Compare expression of checked genes

Lus10022080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.