Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20960 131 / 2e-32 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 129 / 6e-32 U5 small nuclear ribonucleoprotein helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025169 [exp] 173 / 4e-51 AT1G20960 283 / 3e-87 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 177 / 3e-48 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10013662 [exp] 113 / 2e-28 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020194 [exp] 43 / 6e-05 ND / Lus10025168 [exp] 0 / 1 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095500 [exp] 160 / 2e-42 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 155 / 6e-41 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G088400 [exp] 43 / 0.0002 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022081 pacid=23160300 polypeptide=Lus10022081 locus=Lus10022081.g ID=Lus10022081.BGIv1.0 annot-version=v1.0 ATGGTTTCAGGTCATGGAACACGAAGTTCAAAGACTCAAGAATTCAGAAAGAAGTTCGATGGCGAGTTTGAAGGATTCGAAGAAGTTAGGAGCAAAAGCG ACACATTCGATTTGGGGTATTGGGAGGACGTACCCATGGCTCATGGATCCTTATGTCCTGGAGCTTCTAACCGCCCGAGATGCTTGTGCCTGGTGCTTTC GATTTGGGGTCTGGCAGGTGGATATTGTAGGCGACGCCGAAACGGTTCCCTCTCGGCTTTCGCATCATGGAGCAAACAAGCAGTGAAATTTTTGTACGCT TCTCTTTGCCTTATCTGTGATTGCTGTTCTTCTTCTTTTCTGGAGTACGACCTCGGTGTCCAGCCCGAATCCGTCAACCCGGCGGACTCCAAGCAGATCC GAATTCCTAAACAGGTCTACCAAGGGCCCCACGCTGAAGAGGTCGTTGGCGGAGTACTTATCGGCGCGTTTGGAGATGGAGACGTGGAGGACACAGACGC CACCAGGCTTGAGCGTACGCTCGATTTCACTGACGAAACGCGCGGGGTAGAGCGCGTGGTCGAAGACGTTGGAGAATTCGAAGTCGAAGGTGGAATTGGG GAAGGGCTGGTTGTGGAAGTCGCCCTTGAGGACAAGAGGAGGGGAAGGGACAAGGTCGATGCCGATGGAGTCGTTGACGCCGAGGCGGCGGAGGGCTTCG ACCTCCTGGCCAACGCGGGCGCCGACGGAGAGGGCGCAGAAGAGAGTGTCCTTAACTCAACTGAGGAAGGAGTATACCAGCCGAAGACCAAGGAAACTAG AGCTGCATATGAAGCCATGCTTAGTGTTATTCAAAGACAACTGGGTGGTCAGCCTCTTAATATTGTCAGCGCTGCTGCTGATGAACTTCTGGCTGTCCTT AAGAACGAGTCCTTCAAGACCCCTGACAAGAAGAAGGTAATTGAGAAGTTATTGAATCCCATTCCTGGGTATTTATTTGGTGAGATGGTTTCCATTGGTC GTCTGATCATAGATTACCAAGATGCAGTTGATACTGCAGCTGATGGCGATGAAGCTCTTGACGATGATGTTAGTGTTGATGAAGAGGATGATAATGATTT GGTTGTTAAGCGAGATGGTGGTAGCTCTATGCAGGTGGGTGGCATGATTGATGACGATGACATGGGTGAGGAAAATGAGGGCATGAATCTTAGTGTTCAG GATACTGATGCTTACTGGCGAGGAAGATCTCTCAGGCTTATGAACAACAGATTGACCCACATCAGTGTCAAAGGCTTGAAAAAGAGGTGCTAA
AA sequence Show only first row Show all	>Lus10022081 pacid=23160300 polypeptide=Lus10022081 locus=Lus10022081.g ID=Lus10022081.BGIv1.0 annot-version=v1.0 MVSGHGTRSSKTQEFRKKFDGEFEGFEEVRSKSDTFDLGYWEDVPMAHGSLCPGASNRPRCLCLVLSIWGLAGGYCRRRRNGSLSAFASWSKQAVKFLYA SLCLICDCCSSSFLEYDLGVQPESVNPADSKQIRIPKQVYQGPHAEEVVGGVLIGAFGDGDVEDTDATRLERTLDFTDETRGVERVVEDVGEFEVEGGIG EGLVVEVALEDKRRGRDKVDADGVVDAEAAEGFDLLANAGADGEGAEESVLNSTEEGVYQPKTKETRAAYEAMLSVIQRQLGGQPLNIVSAAADELLAVL KNESFKTPDKKKVIEKLLNPIPGYLFGEMVSIGRLIIDYQDAVDTAADGDEALDDDVSVDEEDDNDLVVKRDGGSSMQVGGMIDDDDMGEENEGMNLSVQ DTDAYWRGRSLRLMNNRLTHISVKGLKKRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022081 [exp]	0	1
					Lus10013473 [exp]	1.0	0.8105
					Lus10021186 [exp]	5.8	0.7150
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10001703 [exp]	5.8	0.6507
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000444 [exp]	17.6	0.7106
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	20.4	0.6869
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	21.1	0.7037
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	21.4	0.6699
					Lus10026969 [exp]	25.5	0.6863
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	28.6	0.6668
					Lus10041357 [exp]	28.8	0.6986

Compare expression of checked genes

Lus10022081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.