Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20960 379 / 2e-114 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 365 / 1e-109 U5 small nuclear ribonucleoprotein helicase (.1) AT5G61140 229 / 2e-63 U5 small nuclear ribonucleoprotein helicase (.1.2) AT3G27730 95 / 7e-20 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT3G46960 44 / 0.0005 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042628 [exp] 472 / 3e-157 AT1G20960 921 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 496 / 2e-155 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 492 / 9e-155 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 226 / 4e-62 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10014551 [exp] 89 / 6e-18 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10032137 [exp] 84 / 3e-16 AT3G27730 1291 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10017528 [exp] 43 / 0.001 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095500 [exp] 420 / 1e-128 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 400 / 7e-122 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 230 / 1e-63 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 92 / 7e-19 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02889 [flax] [poplar] Sec63 Sec63 Brl domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10022082 pacid=23160250 polypeptide=Lus10022082 locus=Lus10022082.g ID=Lus10022082.BGIv1.0 annot-version=v1.0 ATGATGAACTCTGGTGCAGATTTGGCTGTGATTCTGCAACAGCTTCGAGCTACACGAGCAACAGCAAAAGAAAGGCAAAAGAACCTGGAGAAGAGCATAA GAAAAGAGGCTCGCAGACTGAAGGATGATATTGTCGGTGATGAGGATAAGGACAGAGGTGCAAACAGTGGTTCGGTGAAGAGCCAACTCAAGCTGCTAGA CCTGGACGATATTGCTTTCGAACAGGGCGGTCTTCTGATGGCAAATAACAAGTGTGATCTTCCTGAAGGTTATTACACAAATCAGAGCAAGGGTTTTGAA GAAGTTCACGTGCCAGCTTTGAAACCAGAACCTCTGGGTTCTGATGAGAGACTTGTGAGAATATCTGAGATGCCAGAATGGGCACAGCCTGCTTTTAAAG GCATGCAACAACTGAACAGGGTGCAGATTCTGACGATACTTCAGCAACTTTGTCTTTACAGGAACAAGGATGGATCATTTGATCATAACGGCTATAAAGA TAGTTATGTGGCGCCCATGAAAGCTCTTGTGGCTGAAGTTGTTAGAAATTTGTCCAATTGTCTGCAAGAACACGGAGTGAATGTGAAGGAACTAAGTGGA GACCAGTCACTGACTCGTCAACAAATTGAAGAAACTCAGATAATTGTGACTACTCCAGAGAAATGGGATATAATTACCAGGAAATCTGGGGATCGCACTT ACACTCGTCTAGTTAAACTTGTTATAATCGACGAGATCGATCTTCTTCATGATAGCAGAGGTCATGTACTGGAAAGTATAGTTGCTAGAACTGTTAGACA GGTTGAAACAACAAGAGACCCTATCAGGATGGTGGGGTTGTCAGCTACACTGCCAAACAATCCTACCCTTTATGGTCTACCAGCCGATATTCGTACCAGA AATATTAAACTGGAGCAGAGGATGGCTGATTTGGTTCATTCAGCTGCTACAATTTTGGACAGGAATAGCTTGGTCAAGTATGACCGGAAAAGTGGATATT TCCAGGTTACCGACCTTGGTCGGATTGCCAGCTACTATTATATTACACACGGCACCATATCCATGTATAATGAGCATCTGAAACCCACTATGGGTGACAT CGAGCTCTGTCGCTTGTTCTCACTCAGCGAAGAATTTAAGTATGTAACAGTGAGACAAGTGGAGAAAATGGAACTAGCAAAGCTGTTGGAGCGTGTTCCA ATTCCTGTTAAGGACAGTCTGGAGGAGCCTAGTGCCAAGATTAATGTTCTTCTTCAAGCTTACATATCACAGCTGAAGCTTGAAGGTCTGTCGTTGACAA CTGACATGGTTTATATAACTCATGTACTTATCCTGAAGGTCGTTGAGCCAATTACACGAACTATTTTGAGGGTAGATCTCACCGTAACACCCGACTTCCA GTGGGATGACAGAGTTCATGGGTACGTTGAGCCATTTTGGGTTATTGTTGAGGATAACGATGGGGAGGATATCCTGCACCATGAGTACTTTATGCTGAAG AAGCAGTATGTTGATGAGGACCACACGTTGAATTTCACAGTGCCAATCTACGAGCCGCTTCCTCCTCAATACTTCATCCGTATTGTATCAGATAGGTGGC TTGGATCGCAAACTGTCCTGCCTGTATCCTCAAGGCACCTAATCTTACCCGAAAAGTATCCACCTCCAACCGAGCTGTTGGATTTGCAGCCTCTTCCAGA GACAGCTTTGAGAAATCCTACATATGAAGCTCTGTATAAGGATTTTAAGCATTTCAATCCAGTTCAGACTCAGGTGTTCACTGTTCTGTACAATACAGAT GAAAATGTCTTGGCTGCTGCACCAACCGGGAGGGGGAAGGCGATATGTGCTGAGTTTGCAATATTGAGGAACCACCAAAAGGGACCACCCGGGATGCGAG CCGTATACATTGCTCCCCTTGAATCAATTGGTAAGGAGAGGTATCGCGATTGGAAAGATAAGTTCGGCGAAAAGCGCCTGCTGAAGCGGTTGCGACCAAT AGTATGGTTTTACTGTCGATGTAGCACGATGATGCAAGTAGGCCTGGAAATCGGTTAA
AA sequence Show only first row Show all	>Lus10022082 pacid=23160250 polypeptide=Lus10022082 locus=Lus10022082.g ID=Lus10022082.BGIv1.0 annot-version=v1.0 MMNSGADLAVILQQLRATRATAKERQKNLEKSIRKEARRLKDDIVGDEDKDRGANSGSVKSQLKLLDLDDIAFEQGGLLMANNKCDLPEGYYTNQSKGFE EVHVPALKPEPLGSDERLVRISEMPEWAQPAFKGMQQLNRVQILTILQQLCLYRNKDGSFDHNGYKDSYVAPMKALVAEVVRNLSNCLQEHGVNVKELSG DQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTRLVKLVIIDEIDLLHDSRGHVLESIVARTVRQVETTRDPIRMVGLSATLPNNPTLYGLPADIRTR NIKLEQRMADLVHSAATILDRNSLVKYDRKSGYFQVTDLGRIASYYYITHGTISMYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQVEKMELAKLLERVP IPVKDSLEEPSAKINVLLQAYISQLKLEGLSLTTDMVYITHVLILKVVEPITRTILRVDLTVTPDFQWDDRVHGYVEPFWVIVEDNDGEDILHHEYFMLK KQYVDEDHTLNFTVPIYEPLPPQYFIRIVSDRWLGSQTVLPVSSRHLILPEKYPPPTELLDLQPLPETALRNPTYEALYKDFKHFNPVQTQVFTVLYNTD ENVLAAAPTGRGKAICAEFAILRNHQKGPPGMRAVYIAPLESIGKERYRDWKDKFGEKRLLKRLRPIVWFYCRCSTMMQVGLEIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022082 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10042628 [exp]	1.0	0.9805
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	2.4	0.9675
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	3.2	0.9748
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10038115 [exp]	4.5	0.9638
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10022965 [exp]	5.5	0.9606
AT3G55160			unknown protein		Lus10007253 [exp]	6.6	0.9641
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016726 [exp]	7.9	0.9184
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	8.0	0.9562
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	8.8	0.9547
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10008047 [exp]	10.2	0.9530

Compare expression of checked genes

Lus10022082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.