Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22830 285 / 4e-93 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G51910 254 / 6e-83 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT2G26150 241 / 3e-77 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT4G17750 236 / 2e-73 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G63350 223 / 1e-70 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT3G02990 224 / 7e-69 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G16820 217 / 4e-66 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT1G32330 214 / 8e-65 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G43840 201 / 2e-62 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT5G03720 177 / 2e-51 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014698 [exp] 407 / 1e-141 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 392 / 2e-135 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 267 / 8e-87 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 267 / 2e-86 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000312 [exp] 229 / 7e-71 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 228 / 2e-70 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 225 / 3e-69 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 224 / 4e-69 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10013797 [exp] 217 / 1e-67 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214800 [exp] 352 / 4e-120 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 342 / 4e-116 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 287 / 6e-95 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 286 / 2e-94 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G138900 [exp] 227 / 1e-69 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.006G226800 [exp] 223 / 1e-69 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.003G095000 [exp] 225 / 6e-69 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 200 / 2e-59 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G148200 [exp] 196 / 5e-58 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.006G115700 [exp] 194 / 3e-57 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10022083 pacid=23160247 polypeptide=Lus10022083 locus=Lus10022083.g ID=Lus10022083.BGIv1.0 annot-version=v1.0 ATGAATCCGTTTTTCACGGTAAAGGAAGAGTTATTCGACGTCGGATACGGTTACCAGGATCCCCGGCCGCATCTGCCGCCAACGACGAGGACAGCTCCGC CACCGCAGCCAATCGAAGGCCTCCACGACGCCGGACCGCCTCCATTCCTGACCAAGACTTTCGAGATGGTCGAAGATCCGATCATCGATGACGTCGTCTC CTGGAGCAGAGGTGGCACCAGCTTCGTCGTCTGGGATCCTGATTCCTTCTCCAATAACCTCCTCCCTCGCTTCTTCAAGCATAGCAACTTCTCCAGCTTC GTCCGCCAGCTCAACACTTACGGATTCCGGAAGATCGATCCAGAGCGATGGGAGTTCGCCGCCGAAGGATTCCTTCGCGGCCAGAAGCATCTACTGAAGA ATATCAGGCGACGGAAAGCTACTTCTCCTTCTTCTCTATCTTATCCTCCTCCTCCTTTTCCTTCTAAGACCTATCCGATTCCCGATCAAGCAGCGGATGC CAGCGCAGTAGAGCTCGGCCGGTTCGGTTTCGACGAGGAAATCAACCGGTTGAAGCGAGACAAACAGGTGCTAACCATAGAGCTGGTGAAGCTCCGGAGG CAGCAGCAGAGCACCAGAGAATTCGTGGCGGAACTGGAGCGGAGACTGAGAGAAACCGAGACGAAGCAGCATCAGATGATGCAGTTCTTGGCTCGGGCGG TTCAGAATCCGGCGTTCTTGCATCAGCTGAAGGATAAGAGAAAAGAGCTCCAGGAAGCGCTGAATAATAAGCGACGGAGGCGGCGTCCGATTGGAGAATC GAGCAAGAATCGGCTGCTGGTGAAACCGGAACCGTTGGAGTACGGATTCGGATGGTCTGACGAGCTGGAAGCGCTGGCGTTGGAGATGCAAGGGTACGGG AAAGGGATTAGGAAGGTTGCAGAAGAAGAGGAGGAGGAGTACATTGAAGCGACGTCGGATCAGGAGCTTGACGACGGGTTTTGGGAAGAATTGTTGAGTG AAAGCACCGGCGGCGACGAAGGAGTAGGGGGGGATCAGGAGGCGGTCACCGCCTTAGCAGAGCAGTTAGGTTATTTGCCGATTCGATTGAAAGTGAATGG GAAAAGAGGCATTCCGAGTGCCACATTTTGA
AA sequence Show only first row Show all	>Lus10022083 pacid=23160247 polypeptide=Lus10022083 locus=Lus10022083.g ID=Lus10022083.BGIv1.0 annot-version=v1.0 MNPFFTVKEELFDVGYGYQDPRPHLPPTTRTAPPPQPIEGLHDAGPPPFLTKTFEMVEDPIIDDVVSWSRGGTSFVVWDPDSFSNNLLPRFFKHSNFSSF VRQLNTYGFRKIDPERWEFAAEGFLRGQKHLLKNIRRRKATSPSSLSYPPPPFPSKTYPIPDQAADASAVELGRFGFDEEINRLKRDKQVLTIELVKLRR QQQSTREFVAELERRLRETETKQHQMMQFLARAVQNPAFLHQLKDKRKELQEALNNKRRRRRPIGESSKNRLLVKPEPLEYGFGWSDELEALALEMQGYG KGIRKVAEEEEEEYIEATSDQELDDGFWEELLSESTGGDEGVGGDQEAVTALAEQLGYLPIRLKVNGKRGIPSATF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10022083 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	12.0	0.8061
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	13.3	0.8045
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	13.4	0.7650
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	14.5	0.7759
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	14.7	0.7203
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	16.7	0.7668
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	17.7	0.7964
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10005611 [exp]	18.8	0.7430
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	19.7	0.7917
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	21.6	0.7801

Compare expression of checked genes

Lus10022083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.