Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02680 1202 / 0 EOL1 ETO1-like 1 (.1) AT3G51770 849 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 728 / 0 EOL2 ETO1-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022660 [exp] 768 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 756 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 748 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 733 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 731 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012472 [exp] 102 / 1e-24 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 161 / 1e-20 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 61 / 6e-11 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 58 / 1e-09 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048300 [exp] 1331 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 1319 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.009G075300 [exp] 863 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 858 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 835 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.016G123800 [exp] 827 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.019G025600 [exp] 44 / 0.0004 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022084 pacid=23160297 polypeptide=Lus10022084 locus=Lus10022084.g ID=Lus10022084.BGIv1.0 annot-version=v1.0 ATGAAAGGGTTCTTCCCATCATCAGAGTCTTGTAAAGAATCTCAGCTGAGTTCACTGAATCCACAGTCATGGCTTCAAGTTGAAAGAGGGAAGCTTTCCA AGCTCGCTTCACATCCTTTCGATTCATCCATAGAATCACTTATCAAGATTGCGGAACCACTGGTGCTGCCATTCTTTAAACCTGTTGATTATGTACAAGT TTTAGCTGAGATTCATGAAGAACTCGAATCATGTGACACTAAAGATACTTCGAGTCTGTATTTATTGCAATTTGAGGTATTTAGAGGCCTCGGGGAGGTC AAGTTGATGCGTAGAAGACTCCGACTAGCTTGGCAGAAGGCTAATTCGGTTCACGAGAAGATTGTATTCGGGGCGTGGTTAAAGTACGAGAAGCAAGGCG AGGAACTTATTGCCGACTCGCTTGCAACCTGTGGGAAATGCGTCAAAGAGTTTGGGCCAGTCGATATTATTACCGAACAACTCAATCTCGACACGAGCTT GCATTCTTGGGAGACTTTGTCTGATGGCGGTGATTCGGGGGATGTCACTTTCAGAATCGGAGATTACAAAATCGTTTGCGATAGGCAGAAGATAGCTCGT CTGTCTGCTCCGTTTAATGCTATGCTATATGGTAGTTTCTCGGAATCGCTTCGCGAAGATATTGATTTGTCCGAAAACAGTATATCGGTTTTGGGGTTTC GAGTTGTGAGCCAGTTCAGCCAAACGGGGATTCTAAATGAAGTTCCTCCGAATGCTCTGTTGGAAGTCTTGTGCTTTGCAAACAAGTTCTGTTGTGAAAC GCTGAAAGATGCGTGCGATCGGAAACTCGCATTGTTAATATCGTCAAGAGAGGACGCAGTGGAACTCGTGGAATATGCTCTCGAAGAAAACACTCCCGTT CTTGCCGCCGCGTGTTTACAGATTTTCTTGCGGGAACTACCCGATTGTTTGAACGATGACCGTGTCAATCGAATATTCAGCAATGCCAACGAACACGAGA GAAGGATCTTGGCCGGATCGGCTGCATTTCCGCTCTATTCTTTACTAAGTGAAGTTTCCATGAGCATTGATCCTCAGTCTGATAAAACAGTGTCTTTCCT TCAGCAGTTAGTCAATTCGGCTGAAAGTGATCGGCAGAAAATGGTGGCTTTTCATCAATTGGGATGCGCGAGGCTCTCGAGGAAAGAGTATGACGAAGCT CAACGACTTTTCGAAGTCGCTGTATCTCTAGGACACACTTACTCGGTGTCTGGTCTGGCTAGACTCGACTACATTAGGGGGGAGCGATGTTCGGCTTATG AGAAGCTTAGTTCGGTTATTTCCTCTGTAACTACTCCACTGGGATGGATGTATCAAGAACGATCCTTATATTCTGAAGGTACTCAAAAGTTAGAAGACCT CGAGAAAGCAACCGAGTTGGATCCAACGCTGACGTACCCTTACATGTACCGTGCTGCTTCCTTGATGAGAAATCAGAATGTTCAAGCTGCGCTTGCGGAA ATCAATAGGGTTCTCGGATTCAAACTGGCACTGGAATGCTTAGAGCTTCGTTTTTGCTTTTATCTTGCACTCGAGGATTACCGGGCGGCCTTATGTGATA TTCAGGCGATTCTTACGCTCTCGCCGGGATATAGGATGTTCCAAGGACGGGTTGCGGCATCCCAACTTCGTATACTTGTCCGCGAACATGTCGAGAATTG GACCGCAGCGGATTGTTGGCTGCACCTATATGATAGGTGGTCTTGTGTTGATGATATAGGATCCCTCTCTGTGATATACCAGATGCTTGAATCGGATCCG GCAAGAGGACTTCTTTATTTCAGACAGTCACTGCTTCTTCTGAGGTTGAACTGCCCTAAATCAGCAATGAGAAGTTTACAACTAGCTCGCCAACATGCAT CGACAGCGCATGAACGTTTGGTATATGAAGGATGGATTTTGTATGATACTGGTCACTGTGAAGAAGGGCTTCAAAAAGCAGAAGAATCTATTAGAATCAA GAGATCGTTTGAAGCGTTTTTCCTTAAAGCCTATGCATTGGCTGACTCAAGCCTTGACGCTTCATCTTCCGAAACCGTTATTTCACTCCTCGAAGATGCT TTGAAATGTCCTTCCGACAGATTGCGTAAAGGCCAGGCACTAAACAATCTTGGGAGCGTCTATGTCGACTGCGGGAAATTAGATTCTGCAGCCGATTGCT ACATCAACGCCCTGAATATCAAGCACACCAGAGCACATCAAGGACTCGCCCGCGTCCACTTCCTGCGAAACGACAAGGCAGCAGCGTACAACGAAATGAC CAAATTGATCGAGAACGCTCAGAACAATGCGTCTGCATACGAGAAGAGGTCCGAGTACTGCGATCGCGACCTCACAAAGGCGGATCTCGAGATGGTCACG AAACTAGATCCGCTTCGTGTCTATCCTTACAGATACAGAGCTGCAGTATTGATGGACGGCCAGAAGGAGAAAGAGGCAATTGCAGAGCTATCAAGGGCAA TTGCATTCAAAGCGGATCTCCACCTGCTGCATTTGAGGGCAGCTTTCCATGAGCATATCGGGGACGTAACGGGTGCTCTCCGAGACTGTCGAGCGGCTCT ATCTGTCGACCCGAACCATCAAGAGATGCTCGAACTCCACAGCCGGGTGAATAGCCATGAGCCATGA
AA sequence Show only first row Show all	>Lus10022084 pacid=23160297 polypeptide=Lus10022084 locus=Lus10022084.g ID=Lus10022084.BGIv1.0 annot-version=v1.0 MKGFFPSSESCKESQLSSLNPQSWLQVERGKLSKLASHPFDSSIESLIKIAEPLVLPFFKPVDYVQVLAEIHEELESCDTKDTSSLYLLQFEVFRGLGEV KLMRRRLRLAWQKANSVHEKIVFGAWLKYEKQGEELIADSLATCGKCVKEFGPVDIITEQLNLDTSLHSWETLSDGGDSGDVTFRIGDYKIVCDRQKIAR LSAPFNAMLYGSFSESLREDIDLSENSISVLGFRVVSQFSQTGILNEVPPNALLEVLCFANKFCCETLKDACDRKLALLISSREDAVELVEYALEENTPV LAAACLQIFLRELPDCLNDDRVNRIFSNANEHERRILAGSAAFPLYSLLSEVSMSIDPQSDKTVSFLQQLVNSAESDRQKMVAFHQLGCARLSRKEYDEA QRLFEVAVSLGHTYSVSGLARLDYIRGERCSAYEKLSSVISSVTTPLGWMYQERSLYSEGTQKLEDLEKATELDPTLTYPYMYRAASLMRNQNVQAALAE INRVLGFKLALECLELRFCFYLALEDYRAALCDIQAILTLSPGYRMFQGRVAASQLRILVREHVENWTAADCWLHLYDRWSCVDDIGSLSVIYQMLESDP ARGLLYFRQSLLLLRLNCPKSAMRSLQLARQHASTAHERLVYEGWILYDTGHCEEGLQKAEESIRIKRSFEAFFLKAYALADSSLDASSSETVISLLEDA LKCPSDRLRKGQALNNLGSVYVDCGKLDSAADCYINALNIKHTRAHQGLARVHFLRNDKAAAYNEMTKLIENAQNNASAYEKRSEYCDRDLTKADLEMVT KLDPLRVYPYRYRAAVLMDGQKEKEAIAELSRAIAFKADLHLLHLRAAFHEHIGDVTGALRDCRAALSVDPNHQEMLELHSRVNSHEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	0	1
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	1.7	0.9109
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	2.8	0.8858
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028371 [exp]	6.2	0.8203
AT3G22520			unknown protein		Lus10006124 [exp]	7.3	0.8335
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	7.6	0.8085
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	7.7	0.8477
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	9.5	0.8645
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	9.9	0.8451
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	11.1	0.8297
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	11.7	0.8356

Compare expression of checked genes

Lus10022084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.