Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04810 93 / 1e-23 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 89 / 2e-22 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 88 / 4e-22 ATNEK4 NIMA-related kinase 4 (.1.2) AT1G54510 84 / 2e-20 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G44200 69 / 2e-15 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 61 / 1e-12 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 55 / 2e-10 ATNEK7 NIMA-related kinase 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042632 [exp] 97 / 3e-25 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10001783 [exp] 90 / 1e-22 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 88 / 5e-22 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 83 / 3e-20 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 83 / 4e-20 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 66 / 3e-14 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 65 / 9e-14 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 60 / 5e-12 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 59 / 6e-12 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049400 [exp] 96 / 8e-25 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 88 / 5e-22 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.005G051600 [exp] 88 / 6e-22 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.009G020100 [exp] 76 / 8e-18 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G218100 [exp] 74 / 3e-17 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.016G051900 [exp] 62 / 6e-13 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 62 / 8e-13 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 58 / 2e-11 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.001G018700 [exp] 57 / 4e-11 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022086 pacid=23160252 polypeptide=Lus10022086 locus=Lus10022086.g ID=Lus10022086.BGIv1.0 annot-version=v1.0 ATGTCACCTGGAGCCAATCCATGGGTGACTCGAGACAAAAGCGGTTTGACACCTCGTCATACCCACAAAAGGGCTGAGGCATTGGAGGGGATGCTTGAGT TCAGCTTGCGTCGATTGCAGCAGGAACGCTATGACGAGCTAGATGTGCTCCTCAAACCGTTCGGACCTGAAAAAGTATCCCCCTGGGAGACTGCCATCTG GTTGGCTAAGAGCTTCAAAGAAACAGCCTTAAGTTAA
AA sequence Show only first row Show all	>Lus10022086 pacid=23160252 polypeptide=Lus10022086 locus=Lus10022086.g ID=Lus10022086.BGIv1.0 annot-version=v1.0 MSPGANPWVTRDKSGLTPRHTHKRAEALEGMLEFSLRRLQQERYDELDVLLKPFGPEKVSPWETAIWLAKSFKETALS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Lus10022086 [exp]	0	1

Compare expression of checked genes

Lus10022086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.