Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17450 206 / 3e-61 B-block binding subunit of TFIIIC (.1.2) AT1G59077 196 / 4e-59 unknown protein AT1G58766 196 / 4e-59 unknown protein AT1G59453 196 / 9e-58 B-block binding subunit of TFIIIC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000369 [exp] 403 / 1e-141 AT1G17450 294 / 2e-88 B-block binding subunit of TFIIIC (.1.2) Lus10015660 [exp] 277 / 1e-94 AT1G17450 205 / 7e-60 B-block binding subunit of TFIIIC (.1.2) Lus10037675 [exp] 279 / 9e-87 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 228 / 5e-69 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022088 pacid=23146476 polypeptide=Lus10022088 locus=Lus10022088.g ID=Lus10022088.BGIv1.0 annot-version=v1.0 ATGCTGGGAGCAACATTACGACATTACTCCGAGCACGATATTTTTACTGCCTTTAGCTATCTCAGGGATAACAAAATATTGATTGGGGGCAATGGTGGTC CTTTTGTGCTGTCTCAGCACTTTCTGCACAACATCTCCAAGTCTCCGTTTCCTACTAATACTGGGAAAAGGGCAGCTAAGTTTTCTAATTGGCTTCAGGA AGGAAAGAATTATCTTATAGGCGGAGGCATTGATCTGAAAGAAGATTTGCAGTGTGGTGACATATTTCATTTGTTTGCTCTAGTTTCTTCTGGTGAAATG TCAGTTTCTCCATGCCTGCCCGATGAAGGTCTGGGAGAGGCTGAGGACCTGAGAAGCTCAAAACGGAAAGCCGAGCCTGATGAACCTTGTGAAAGTGAGA AAGCTACTAAGAAAGTGAAATTCGTGCGAGACGCTGATCTTTTTTCTCGCCGGGAAAAAGGCTTTCCTGGTATAAGAGTATCCATTTGTCGTGAAACAAT CTTGCTGGTTGATGCTCTTGAACCTCTGGATGATGGCAGAAATGGTACTGATAACTCTCAGAAGGATAAAATGGAGCCTGCTTTTTGTCCCAAGAGACTG CCTTGTGCCACGAAGGCCCAATTTTGA
AA sequence Show only first row Show all	>Lus10022088 pacid=23146476 polypeptide=Lus10022088 locus=Lus10022088.g ID=Lus10022088.BGIv1.0 annot-version=v1.0 MLGATLRHYSEHDIFTAFSYLRDNKILIGGNGGPFVLSQHFLHNISKSPFPTNTGKRAAKFSNWLQEGKNYLIGGGIDLKEDLQCGDIFHLFALVSSGEM SVSPCLPDEGLGEAEDLRSSKRKAEPDEPCESEKATKKVKFVRDADLFSRREKGFPGIRVSICRETILLVDALEPLDDGRNGTDNSQKDKMEPAFCPKRL PCATKAQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17450			B-block binding subunit of TFI...		Lus10022088 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	4.2	0.7940
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	8.7	0.7584
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	12.3	0.7584
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	13.5	0.7736
AT4G10930			unknown protein		Lus10032402 [exp]	19.2	0.7563
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	27.9	0.7295
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	29.0	0.6851
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	29.8	0.7423
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	31.7	0.7212
AT5G49960			unknown protein		Lus10041014 [exp]	39.8	0.7131

Compare expression of checked genes

Lus10022088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.