Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59077 199 / 1e-58 unknown protein AT1G58766 199 / 1e-58 unknown protein AT1G59453 199 / 3e-57 B-block binding subunit of TFIIIC (.1) AT1G17450 190 / 5e-54 B-block binding subunit of TFIIIC (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037675 [exp] 313 / 8e-97 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10000370 [exp] 276 / 1e-94 AT1G59453 64 / 1e-12 B-block binding subunit of TFIIIC (.1) Lus10000369 [exp] 110 / 3e-27 AT1G17450 294 / 2e-88 B-block binding subunit of TFIIIC (.1.2) Lus10015660 [exp] 61 / 3e-10 AT1G17450 205 / 7e-60 B-block binding subunit of TFIIIC (.1.2) Lus10015659 [exp] 0 / 1 AT1G17450 111 / 3e-36 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 242 / 5e-72 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022089 pacid=23146497 polypeptide=Lus10022089 locus=Lus10022089.g ID=Lus10022089.BGIv1.0 annot-version=v1.0 ATGTCGAGCTACGCGAGTTATCTCCATTCAGATCTTTGTGCCCTGAAAGAAGAAAGTTTATTCAGTCCTAAGAGCTTCCAGGATTCCTACAAGGCGATTC ATAGAGCTGGAGATCAAGGCTTGAGTTTTGAGGAAGTTTCCCAGACTCTGGACATGCTAGAGGGCACCTTTCCAGTATATTTTTCAGTTCACTTAATGGT TATCCATCCTATGGCATGCATTCCAGGAGAAAAAATGGTTGATTCTGTCATTGATGTGCTCCAAACGTTTGGACGAGTATTAAAGGTCAATGCTTATGAC TCGGTTCGTGTTGTTGATGCTTTATATCTGACCAAGTACTCTTTGACCTCGAGGCCTTCTTTGGATAGCGATCCTAAGTCAATGTCAGAGTCATATGAGA GAAGTGAGGATGGTCAACCCGAAACTAATGAAGCAGTTAACCCTAAGCCCCATGCTGCAGCAGACCAATCGATCTCGGGCGACAATGATGTGCACAAAGT TACTATTCTTAACCTTCCAGACGAGGCCGTGCCATTGAGAGAAACACAAAGTAGAAACTCACAAGAAAGTGATGTGCAAGACCAGAACGTGATAAATATT CATGAACAACGTATTGATAGTAAAAGTTATATGCCAATCCTCCCATGGATTAATGGAGATGGTACCACAAACAGGGTAGTGTATAGGGGACTCGTCCGTC GTGCTCTTGGAACTGTGATGCAATATCCTGGGATACTCGAGGAGGAGATTATCAAACGAATGGATGTGCTGACCCCGCAGAGTTGCAGAAGATTGTTGGA GTTAATGGTGTTGGATAGTCACCTAATAGTGAGAAAGATGCAACAATCGACAGGAAATGTATCTCCAGCACTGCTCCGGAAGAGCATGAGCAGCAGCAGC AGCTTGAGTAAACCAAGTTCCATGTACAGAAACCATTTCTTTGCCAACCCCAAGAGCACGTACCCTCTGTAA
AA sequence Show only first row Show all	>Lus10022089 pacid=23146497 polypeptide=Lus10022089 locus=Lus10022089.g ID=Lus10022089.BGIv1.0 annot-version=v1.0 MSSYASYLHSDLCALKEESLFSPKSFQDSYKAIHRAGDQGLSFEEVSQTLDMLEGTFPVYFSVHLMVIHPMACIPGEKMVDSVIDVLQTFGRVLKVNAYD SVRVVDALYLTKYSLTSRPSLDSDPKSMSESYERSEDGQPETNEAVNPKPHAAADQSISGDNDVHKVTILNLPDEAVPLRETQSRNSQESDVQDQNVINI HEQRIDSKSYMPILPWINGDGTTNRVVYRGLVRRALGTVMQYPGILEEEIIKRMDVLTPQSCRRLLELMVLDSHLIVRKMQQSTGNVSPALLRKSMSSSS SLSKPSSMYRNHFFANPKSTYPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59077			unknown protein		Lus10022089 [exp]	0	1
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041911 [exp]	1.4	0.8780
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040031 [exp]	3.2	0.8785
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	4.6	0.8568
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	8.1	0.8760
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	12.2	0.7878
					Lus10007207 [exp]	13.5	0.8066
AT1G23230			unknown protein		Lus10035997 [exp]	14.8	0.8543
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	15.8	0.7948
					Lus10009514 [exp]	16.7	0.8555
AT2G28085			SAUR-like auxin-responsive pro...		Lus10001397 [exp]	18.0	0.8394

Compare expression of checked genes

Lus10022089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.