Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39350 87 / 7e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 87 / 8e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 84 / 8e-19 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 84 / 1e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 82 / 4e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59600 81 / 1e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 81 / 1e-17 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16470 79 / 3e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 80 / 4e-17 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 79 / 6e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022094 [exp] 247 / 2e-84 AT5G44230 92 / 3e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001187 [exp] 190 / 1e-55 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10005638 [exp] 81 / 2e-18 AT5G40410 305 / 9e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022124 [exp] 81 / 3e-18 AT2G20540 345 / 1e-116 mitochondrial editing factor 21 (.1) Lus10002553 [exp] 81 / 3e-18 AT2G22410 365 / 3e-122 SLOW GROWTH 1 (.1) Lus10030225 [exp] 81 / 8e-18 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 82 / 9e-18 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021229 [exp] 82 / 1e-17 AT5G40410 662 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 81 / 1e-17 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006400 [exp] 87 / 2e-19 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 85 / 5e-19 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 84 / 1e-18 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 84 / 1e-18 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 84 / 1e-18 AT3G22690 582 / 0.0 unknown protein Potri.003G058700 [exp] 83 / 3e-18 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 82 / 4e-18 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 82 / 5e-18 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068900 [exp] 82 / 6e-18 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086900 [exp] 82 / 6e-18 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022090 pacid=23146500 polypeptide=Lus10022090 locus=Lus10022090.g ID=Lus10022090.BGIv1.0 annot-version=v1.0 ATGGTATCATTTGTGTTTAGCCTTGTGATACTTATTGGTAGAGTCAACAGATGGAATCTAATAAGAGATAATGTGTTTACCTGCTCATTTTGCAGGAATG TTGGAGAGAAGTTGAAGCTGTCATCTTTCTTGAAACCTGAGACTTTGGCGGAGCATGTGACTTGTATGGTGGACCTTCTTGGAAGAGCTGGGCAGCGTGG AAGGGCGTACAATCTGATGATGATGAATAATGCTGATGATGCGGTGAGTGATATTGGGATTTGGGGTGCTTTCCATGCAGCTTGTAGGGTTCATGGCAAT GCAGAAATGGGTGAGATGACAGCCAGGCATCTTGGGGAAATGGATACCGAGGATTTGGGAAACAAGATTCTTTTGACAAATGCTTATGCTTCAAATAGTA AACGGGATTCCGCTGAGAAGGTGCGGAAGACCATGGTAGAAAAAAAGACTGAAAAGAAGCCCTGGCTGCAGCTGGATTTTAGGTTGACTACCACCCTTTT CAATACTTTTTTTGTTGGTTACGTGAACCTTTCCAATACTTTGGTGAAGTATCAAAGGATAAATTTTAGTCTCAAAACTCGTGGCTACGTACTACAACGG CGGGAAGAAGATAAGAGGTTTGTTTTTGAGGGCTACTATTTGACGCCCTAA
AA sequence Show only first row Show all	>Lus10022090 pacid=23146500 polypeptide=Lus10022090 locus=Lus10022090.g ID=Lus10022090.BGIv1.0 annot-version=v1.0 MVSFVFSLVILIGRVNRWNLIRDNVFTCSFCRNVGEKLKLSSFLKPETLAEHVTCMVDLLGRAGQRGRAYNLMMMNNADDAVSDIGIWGAFHAACRVHGN AEMGEMTARHLGEMDTEDLGNKILLTNAYASNSKRDSAEKVRKTMVEKKTEKKPWLQLDFRLTTTLFNTFFVGYVNLSNTLVKYQRINFSLKTRGYVLQR REEDKRFVFEGYYLTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10022090 [exp]	0	1
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	5.7	0.7582
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	10.8	0.7981
					Lus10026444 [exp]	12.2	0.7266
AT1G45063			copper ion binding;electron ca...		Lus10019405 [exp]	12.4	0.7410
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	14.5	0.7353
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	16.4	0.7384
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10043373 [exp]	18.8	0.7369
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	20.2	0.7394
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	20.8	0.7383
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Lus10043260 [exp]	27.5	0.7359

Compare expression of checked genes

Lus10022090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.