Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23070 847 / 0 ATCFM3A CRM family member 3A (.1) AT4G14510 806 / 0 ATCFM3B CRM family member 3B (.1) AT4G29750 545 / 1e-179 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G18390 480 / 9e-155 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 466 / 1e-147 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT5G16180 328 / 7e-99 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G25440 113 / 1e-26 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G13070 92 / 1e-19 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT2G28480 90 / 8e-19 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 86 / 3e-17 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001187 [exp] 1301 / 0 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 533 / 4e-175 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 464 / 1e-148 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 464 / 2e-148 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 444 / 3e-139 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10033576 [exp] 367 / 2e-113 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10005957 [exp] 338 / 1e-107 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10033313 [exp] 313 / 1e-97 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10039393 [exp] 299 / 2e-93 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077100 [exp] 993 / 0 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 471 / 6e-152 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 463 / 4e-146 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.017G116700 [exp] 380 / 1e-117 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 266 / 5e-81 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G176900 [exp] 113 / 5e-26 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 90 / 6e-19 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 90 / 1e-18 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 83 / 4e-16 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 56 / 1e-07 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10022091 pacid=23146478 polypeptide=Lus10022091 locus=Lus10022091.g ID=Lus10022091.BGIv1.0 annot-version=v1.0 ATGGAGAGAATAGTCCAGAAATTAAGGAGACATGGGTATGTTAATGACGAGAATAATAGTGGTAATGAGATGAAGGAGAAAGCTCCAGAGAGAGTGATAG AGAAAGGAAGTGTGGAAGACATATTCTATGTAGAGGAAGGGATGTTACCAAATGCACAAGGTGGGTTCTCAAAGGAATCGCCTCTAGGAATAGAGAGCGT GTTTAAGAGTGATGGGGAGATTCGTTTCCCATGGGAGAAGCCGAAGAAGGAGGAGGTGGAGAAGGGTAGGTGGACTGCTGAAAAGAAGAGTAGAACCTTT TTTGCAGAGTTGACATTGCCTCAGTCAGAGTTGAGAAGGCTGAGGAACTTAACTCATCAAACAAAGAGTAAGACAAGGATTAAGGGATCGAGGATTACTC AGGAAATCGTGGATGTCATTCGGGAGAAGTGGGAGTCCTCTGAGATTGTGAAGATTAAAGTGGAGGGAACATCTGCTCTTAATATGAGGCGGATGCATGA GCTACTAGAGAAAAAGACTGGTGGCATTGTTATTTGGAGGTCTGGCTCTTCTATCTCTTTATATAGGGGTGTGAGCTATGAGGTTCCTGTTGTCAAACAG AGGCGAATATTCAGTAAAACTGAAAGATCCACAAATCACGTGCAACCAGCCGTCGGTAATCGTCTTGCTTTCCCTTCAAATGGTATTGAGAATGAAGTTC AAACACCACTACCAAATTCAGATATTATGGCTGATCATGAAAAGGTGCCAGACACAGAAATATCATCAGAAACAAGCTATGAAACTGAAGTAGACAAACT GTTAGATGGCCTGGGTCCCAGATATGCAGAGTGGCCAGGATGTGATCCTTTACCCGTGGATGCGGATATGCTCCCTGGTATAGTTCCTGGATACGAGCCT CCCTTCAGGATACTTCCATATGGAGTGAGATCTTCACTTGGACATAAAGAGGCAACTTCCTTACGCCGACTTGCCCGTTTTCTTCCCCCACACTTTGCTC TAGGCAGAACAAGGAACCTTCAGGGTTTGGCAGTGGCCATGATCAAATTATGGAATAAGAGTTCAGTTGCAAAGGTAGCTCTTAAGCGTGGCGTACAGCT TACAACCAGTGAAAGAATGGCTGAAGATATTAAGAAATTGACAGGGGGGATACTGCTTTCTAGAAACAAAGACTTCCTAGTTTTCTACAGAGGAAAGAAT TTCTTATCACCAGATGTCAGTGAAGCATTGCTGGAAAGGGAGATGCTGGCAAAATCTTTACAAGATGAAGAGGAGCAAGCACGTTTAAGAGCGTCAGTCT TTGTTATACCGAGTGATCACAGAGCAAAACAGGTAGGAACTGCTGGAACCCTTGAGGAGACTTTGGATGCAAATTCAAGGTGGGGAACAAGGTTGGATGA TCTACACAAAGAAAAAATAATTAAAGAAGCTGAAGTTGTGAGGCATACCAACATCGCAAGGAAGCTTGAAAGGAAGCTCGCATTTGCTGAGAGAAGGCTG ATGAAAGCTGAACAAACATTGTCCAAAGTGGAAGAGTATCTGAAACCATCTGACAGACAAGCAGATCCAGAATGTATTACAGATGAGGAGAGATTTATGT TCCGCAAGCTTGGTTTGAAGATGAAAGCTTTCCTACTTCTAGGAAGACGTGGAATTTTCGATGGTACAGTGGAGAATATGCACTTACACTGGAAGTATCG TGAATTAGTGAAGATCTTGTTTAAGGCTAAAAGTTTTGATGAGGTTAAAAAGATTGCTCTCATGCTAGAAGCTGAGAGCGGGGGTGTCTTGGTTTCTGTT GATAAAGTCTCTAAAGGATATGCTATAATTGTATACCGGGGTAAGGACTATAAAAGACCTTCCTCGTTGAGACCAAAGAACTTATTGACCAAGAGAAAAG CTCTGGCACGTTCGATTGAGATTCAGAGGCGTGAGGCTCTCCTGAAACATGTTTCAGCTCTGCAGACAAAGGTTGAAACTTTGAGAGCTGAAATGGAACA ACTGGGCATTGTAAAAGACCATGGAGATGAACAATTATACGACCGATTAGATGCCTCTTATCCAACAGATGACGATGATGACTCGGATGATAGTGAGAAG GAATGGGATCATTTACAGGAGGAAGGGGATGAATCCTATCTTGACCTGTATGACAGTGATGGCGAGCTTGATGATGATACTGGAGGTGACACAATAGAGA GAATCCACGAAGAGACCAATTTTCCTTACACAATGCAGAATCAATACGAATCTCAATCTGATTCTGGAAGTGAGGATCAAGGTTACAATCTGCATCTCGA AACAGATGAGGATTATGATAATGAACGTGGATCTGAAGCCGATATAGCTCTAGCTCTCTGTATCCATCCCGAGGATTTGAAGTTGCCAGTTGGAGGCACT GCAGGTGGTGATGCACGATACCCTTGGCTGAAGGGTGCTGCGATGCATGAGAAGTCGATGTTAGCCCTGGGGAGCGGTTTAGTGGATGAGGATGCATACA GGGTGTTCATGTTTTGTCTCCTGGGGTCGACTCTATTCACTGATAAGACCGCCGATCGTACTCGTCTGGTGATGTGGGAGTACTTTATGGGGGTCGACTC TAAAATGGTTGTACCACGAGCTGGTCCTGGATTCACGTACTTCCCTAGTACTCGTGCTGCTAGAGTAGTGGCTCGGGAGCGGGGTGATACCGAGGCATTG GTTGGGTGGTGGAGCAGTATCGAGCAGCCAGATCGGTCATACGACTTCATGCACCGTCGTTCGGAGTACTACCGCCGTCTGCTGGATGATATGACCTCAC GGGATGTCATTTGGCTGCCATTTGGGCCATGCCCCGAGGTGGAGGTTCCCGATTCGACGTTCCGTGGGGTCATTCGTTTCGGTCCGACTGCTGAGTATTA TGATCCGACGCGTGTGGTTAGACAGTTCGGCTACACACAGATGATTCCGGATCTTATCCCTTTGCCTTCCAGGGCATACAGGGCGGCTGAGCCCAACGGG TACACAGTTGAGTGGGCTGACAACATAGATAGAGCTTGGAGGGACGGGGACTGGTCCAGGCTGATGCCATTTCAGTCTTTGTTTAGACGTGCCGACGATG TGATCGACGTCGACCCCTGA
AA sequence Show only first row Show all	>Lus10022091 pacid=23146478 polypeptide=Lus10022091 locus=Lus10022091.g ID=Lus10022091.BGIv1.0 annot-version=v1.0 MERIVQKLRRHGYVNDENNSGNEMKEKAPERVIEKGSVEDIFYVEEGMLPNAQGGFSKESPLGIESVFKSDGEIRFPWEKPKKEEVEKGRWTAEKKSRTF FAELTLPQSELRRLRNLTHQTKSKTRIKGSRITQEIVDVIREKWESSEIVKIKVEGTSALNMRRMHELLEKKTGGIVIWRSGSSISLYRGVSYEVPVVKQ RRIFSKTERSTNHVQPAVGNRLAFPSNGIENEVQTPLPNSDIMADHEKVPDTEISSETSYETEVDKLLDGLGPRYAEWPGCDPLPVDADMLPGIVPGYEP PFRILPYGVRSSLGHKEATSLRRLARFLPPHFALGRTRNLQGLAVAMIKLWNKSSVAKVALKRGVQLTTSERMAEDIKKLTGGILLSRNKDFLVFYRGKN FLSPDVSEALLEREMLAKSLQDEEEQARLRASVFVIPSDHRAKQVGTAGTLEETLDANSRWGTRLDDLHKEKIIKEAEVVRHTNIARKLERKLAFAERRL MKAEQTLSKVEEYLKPSDRQADPECITDEERFMFRKLGLKMKAFLLLGRRGIFDGTVENMHLHWKYRELVKILFKAKSFDEVKKIALMLEAESGGVLVSV DKVSKGYAIIVYRGKDYKRPSSLRPKNLLTKRKALARSIEIQRREALLKHVSALQTKVETLRAEMEQLGIVKDHGDEQLYDRLDASYPTDDDDDSDDSEK EWDHLQEEGDESYLDLYDSDGELDDDTGGDTIERIHEETNFPYTMQNQYESQSDSGSEDQGYNLHLETDEDYDNERGSEADIALALCIHPEDLKLPVGGT AGGDARYPWLKGAAMHEKSMLALGSGLVDEDAYRVFMFCLLGSTLFTDKTADRTRLVMWEYFMGVDSKMVVPRAGPGFTYFPSTRAARVVARERGDTEAL VGWWSSIEQPDRSYDFMHRRSEYYRRLLDDMTSRDVIWLPFGPCPEVEVPDSTFRGVIRFGPTAEYYDPTRVVRQFGYTQMIPDLIPLPSRAYRAAEPNG YTVEWADNIDRAWRDGDWSRLMPFQSLFRRADDVIDVDP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10022091 [exp]	0	1
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	4.2	0.9216
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	4.9	0.9139
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	7.2	0.9178
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	8.5	0.8997
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	11.0	0.9085
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	14.1	0.8841
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	15.7	0.9035
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	15.8	0.8790
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	16.3	0.9031
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	16.6	0.9037

Compare expression of checked genes

Lus10022091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.