Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14820 142 / 2e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 140 / 2e-39 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21470 134 / 3e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G56310 130 / 1e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 130 / 2e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77170 129 / 2e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 129 / 4e-35 MEF22 mitochondrial editing factor 22 (.1) AT1G05750 127 / 7e-35 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37570 127 / 2e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G40405 127 / 3e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001187 [exp] 339 / 4e-109 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10010320 [exp] 142 / 1e-39 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10024971 [exp] 137 / 9e-38 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 136 / 1e-37 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 135 / 4e-37 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 135 / 7e-37 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10031430 [exp] 129 / 9e-36 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 130 / 3e-35 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 130 / 3e-35 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086200 [exp] 145 / 1e-40 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G141200 [exp] 140 / 2e-39 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G164100 [exp] 137 / 2e-38 AT1G77170 553 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 138 / 3e-38 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G029500 [exp] 135 / 2e-37 AT3G56550 740 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 135 / 3e-37 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G003600 [exp] 135 / 4e-37 AT5G66520 354 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G087000 [exp] 132 / 7e-37 AT5G66520 335 / 9e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 134 / 1e-36 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 133 / 2e-36 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022093 pacid=23146498 polypeptide=Lus10022093 locus=Lus10022093.g ID=Lus10022093.BGIv1.0 annot-version=v1.0 ATGATTGCAGGTTATGGCAAGTGTGGTGCTGTCAAGGAGGCTAGAAATGTGTTTGGTTCCATACTAGAGCTGGATGCTTCTTGTTGGGCTGCAATGTTGG CATGTTATGCTCAGAATGGATATGCCAAGGAAGCCATTGAGATGTATATGGAGATGAGAGTAGCAGAAGTCAAAATCACAGATGTGGCCATGGTTGGAGC CGTCTCTGCTTGTACTCAGCTTGGAGATGCTGAGTTGGCAACCACATTGGCTGCAGACATAGAGGAAAGACACATTGACAGCGGGGTGATTGTATCAAAT GCTTTGATCCACATGCAAGCCAAATGCGGTTCATTGGACTTGGCCTGGAAAGAATTCAGCGGAATGAAGTTTATAAGTGTAGTCACTTACAGTACTATCA TGGCAGCCTTGGCAGACCATGGCAAGTCTAAGGAAGCTTTAGATATGTTCAAGAGCATGCAGGATGAAGGTTTGAGACCGAATCAAGTTACCTTTGTCAG TGTTCTCAATGCTTGCAGCTATGGAGGTTTGGTGGAGGAAGGCTGA
AA sequence Show only first row Show all	>Lus10022093 pacid=23146498 polypeptide=Lus10022093 locus=Lus10022093.g ID=Lus10022093.BGIv1.0 annot-version=v1.0 MIAGYGKCGAVKEARNVFGSILELDASCWAAMLACYAQNGYAKEAIEMYMEMRVAEVKITDVAMVGAVSACTQLGDAELATTLAADIEERHIDSGVIVSN ALIHMQAKCGSLDLAWKEFSGMKFISVVTYSTIMAALADHGKSKEALDMFKSMQDEGLRPNQVTFVSVLNACSYGGLVEEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14820			Pentatricopeptide repeat (PPR)...		Lus10022093 [exp]	0	1
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	19.2	0.7493
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10022094 [exp]	49.1	0.7164
AT4G20020			unknown protein		Lus10037713 [exp]	86.3	0.6509
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	118.9	0.6900

Compare expression of checked genes

Lus10022093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.