Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04780 92 / 2e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 92 / 4e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16470 88 / 6e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 88 / 9e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 87 / 2e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 86 / 3e-20 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 85 / 7e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 84 / 1e-19 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 82 / 6e-19 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 82 / 7e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022090 [exp] 278 / 6e-97 AT5G44230 88 / 5e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001187 [exp] 208 / 7e-63 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10020743 [exp] 88 / 9e-21 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 88 / 1e-20 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022124 [exp] 84 / 3e-20 AT2G20540 345 / 1e-116 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 86 / 4e-20 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030225 [exp] 86 / 4e-20 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010850 [exp] 85 / 8e-20 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10002553 [exp] 83 / 1e-19 AT2G22410 365 / 3e-122 SLOW GROWTH 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223900 [exp] 90 / 1e-21 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 90 / 2e-21 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 89 / 4e-21 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 88 / 7e-21 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G010100 [exp] 87 / 7e-21 AT4G16470 551 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 87 / 2e-20 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G019900 [exp] 87 / 2e-20 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 87 / 2e-20 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 86 / 3e-20 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 86 / 3e-20 AT3G22690 1050 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022094 pacid=23146455 polypeptide=Lus10022094 locus=Lus10022094.g ID=Lus10022094.BGIv1.0 annot-version=v1.0 ATGACTTGTGTGTACGGAATTAAGACTTTGGCGGAGCATGTGACTTATATGGTGGACCTTCTTGGAAGAGCTGGGCAGCTTAGAAGGGCGTACAATCTGA TGATGATGAATAATGCTGATGATGCGGTGAGTGATATTGGGATCTGGGGTGCTTTCCATGCAGCTTGTAGGGTTCATGGCAATGCAGAAATGGGTGAGAT GACAGCCAGGCATCTTGGGGAAATGGATACAGAGGATTTGGGAAACAAGATTCTTTTGACAAATGCTTATGCTTCAAATAGTAAACGGGATTCCGCTGAG AAGGTGCGGAAGACCATGGTAGAAAAAAAGACTGAAAAGAAGCCCTGGCTGCAGCTGGATTTTAGGTTGACTACCACCCTTTTCAATACTTCTTTTGTTG GTTACGTGACCCTTTCCAATACTTTGGTGAAGTATCAAAGGACAGGTTTCTAG
AA sequence Show only first row Show all	>Lus10022094 pacid=23146455 polypeptide=Lus10022094 locus=Lus10022094.g ID=Lus10022094.BGIv1.0 annot-version=v1.0 MTCVYGIKTLAEHVTYMVDLLGRAGQLRRAYNLMMMNNADDAVSDIGIWGAFHAACRVHGNAEMGEMTARHLGEMDTEDLGNKILLTNAYASNSKRDSAE KVRKTMVEKKTEKKPWLQLDFRLTTTLFNTSFVGYVTLSNTLVKYQRTGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10022094 [exp]	0	1
AT4G14820			Pentatricopeptide repeat (PPR)...		Lus10022093 [exp]	49.1	0.7164
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10000205 [exp]	58.5	0.7560
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	140.4	0.7086
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	221.6	0.7010

Compare expression of checked genes

Lus10022094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.