Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15620 693 / 0 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT1G04400 111 / 2e-25 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 110 / 3e-25 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT5G24850 96 / 8e-21 CRY3 cryptochrome 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000521 [exp] 301 / 6e-98 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10011822 [exp] 109 / 1e-24 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 108 / 1e-24 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10033446 [exp] 108 / 3e-24 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 100 / 5e-22 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10033499 [exp] 91 / 2e-19 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10020878 [exp] 91 / 5e-19 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10007880 [exp] 50 / 6e-06 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G060000 [exp] 709 / 0 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.010G071200 [exp] 116 / 4e-27 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.005G164700 [exp] 114 / 3e-26 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.002G096900 [exp] 111 / 2e-25 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.006G277500 [exp] 99 / 2e-21 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.008G166632 [exp] 47 / 8e-06 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10022095 pacid=23146470 polypeptide=Lus10022095 locus=Lus10022095.g ID=Lus10022095.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCAGCTTCTTCATCTTCCGCCGGGCCGTGTAATTCCCTCGTGTGGTTTCGGAAGGGGCTCCGTGTCCACGACAACCCAGCCCTAGAATACG CTTCCAAAACTGCTGCTGCTGGATTTCTATACCCGGTGTTTGTTATTGATCCGCGATACATGGAACCGGACCCCAATGGTTTTTCTCCCGGTTCGGGTCG AGCAGGGTTGAATAGGATTAGGTTCTTGTTGGAGAGCCTCAAAGATCTGGACTTGAGTCTTAGGAAGCTTGGTTCCAGGTTGCTGGTTCTCAAGGGAGAA CCTGGAGAGGTTTTGATTAACTGCTTGAACCACTGGAATGTTCGAAAACTTTGCTTCGAGTATGAAACAGATCCTTATTACCAACAATTGGACACTAGAG TCAAGGACTGTGCTTCTGCAGCTGGAATTGAAGTGTTTTCCCCTGTGAGTCATACGCTGTTCAATCCAGTTGATATCATACAGAGAAATGGAGGAAGACC ACCTTTGAGTTACCAATCATTTCTGAAGCTTGCTGGGGAACCGTCTTGGGCATCCTCCCCTCTCTTGATAGAAATTTCTTCACTTCCTTCTGTTGGGGAT GATGTCCAGGGCTCCAACATCATAGAAATACCGACTTTGGAAGATCTTGGTTATGTGTACGCTGAAATGGGTGAAGTGCCACCTTTTAAAGGTGGAGAAA CAGAAGGATTGAAGAGGCTAAGAGAAGCTATCAGCAATGAGATACCAGTAAAAAATCCTTACTACCTGAGATCAAATCCAAGTTCTCTTCTTTACTTGGA TAGAAAGTGTCTAACATTGAAACCACAGTGGTACTTCAAAACCAATGTTTCATGTGTTGTGACATTTGGTCTCCTTAGTTTCTATCGCATACTTCACAGA GATTTCCTCACATTGCAGAAGTGGGTGGCGACATTTGAAAAGCCTAAGGGTGATCCATCTGCTTTCTTAAGGCCAGCAACTACAACTCTCTCACCATACT TGAAATGCATTCAAGATGTTTATACGAGGTTTAACAAAAAACACACATCACCACCAGTCTCGCTTCTTGGCCAGTTGCTATGGAGAGATTTCTTTTACAC AGTGGCTTTTGGCACTCCAAACTTTGATCAGATGAGAGGGAACAAAATATGCAAGCAGATACCTTGGAGTGACAATGAAGAATTACTGACAGCTTGGAGA GAAGCTAAAACAGGGTATCCTTGGATTGATGCAATCATGGTCCAGCTCCACAAGTGGGGTTGGATACATCATCTAGCAAGGCACTGCGTCGCGTGTTTCT TGACTCGTGGCGATCTGTTTGTTCACTGGGAAAAGGGGCGGGACGTTTTTGAGAGGCTTCTGATTGATTCAGACTGGGCAATCAACAATGGGAATTGGAT GTGGCTCTCTTGTTCTTCATTCTTCTATCAGTATAACCGGATATACTCACCAATATCATTTGGGAAGAAATATGATCCAAATGGGAACTATATACGACAT TTTCTGCCTATATTGAAAGATATGCCCAAGGACTACATCTATGAGCCATGGACTGCCCCATTGAGTGTCCAAACTAAAGCCAAGTGCATCATAGGAAGGG ATTATCCAAAACCTGTGGTGTGTCATGATTCTGCAAGCAAACAATGCAAGAACAAGTTGGCAGCTGCTTATGAATTGAACAAGAAGCTGAATGGAGTTGT AAGTGAAGATGAACTCAGAACTTTGAGGAGAAAATTGGAAGAAACTTGTGATTCTTCCGACCCCAACCTTCTCGACCATTCTTCTAATGCTAAAAGGCGG AGGTTTTGA
AA sequence Show only first row Show all	>Lus10022095 pacid=23146470 polypeptide=Lus10022095 locus=Lus10022095.g ID=Lus10022095.BGIv1.0 annot-version=v1.0 MASSASSSSAGPCNSLVWFRKGLRVHDNPALEYASKTAAAGFLYPVFVIDPRYMEPDPNGFSPGSGRAGLNRIRFLLESLKDLDLSLRKLGSRLLVLKGE PGEVLINCLNHWNVRKLCFEYETDPYYQQLDTRVKDCASAAGIEVFSPVSHTLFNPVDIIQRNGGRPPLSYQSFLKLAGEPSWASSPLLIEISSLPSVGD DVQGSNIIEIPTLEDLGYVYAEMGEVPPFKGGETEGLKRLREAISNEIPVKNPYYLRSNPSSLLYLDRKCLTLKPQWYFKTNVSCVVTFGLLSFYRILHR DFLTLQKWVATFEKPKGDPSAFLRPATTTLSPYLKCIQDVYTRFNKKHTSPPVSLLGQLLWRDFFYTVAFGTPNFDQMRGNKICKQIPWSDNEELLTAWR EAKTGYPWIDAIMVQLHKWGWIHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPISFGKKYDPNGNYIRH FLPILKDMPKDYIYEPWTAPLSVQTKAKCIIGRDYPKPVVCHDSASKQCKNKLAAAYELNKKLNGVVSEDELRTLRRKLEETCDSSDPNLLDHSSNAKRR RF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	0	1
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	7.1	0.8620
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	8.3	0.8713
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	14.7	0.8214
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10034959 [exp]	15.7	0.8091
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	15.9	0.8069
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	20.7	0.8022
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	22.8	0.8113
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	23.2	0.8210
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018769 [exp]	23.5	0.8283
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	23.7	0.8274

Compare expression of checked genes

Lus10022095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.