Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000531 [exp] 250 / 5e-83 AT3G13840 100 / 4e-23 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065400 [exp] 53 / 4e-08 AT3G13840 430 / 1e-145 GRAS family transcription factor (.1) Potri.001G168800 [exp] 46 / 7e-06 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022098 pacid=23146447 polypeptide=Lus10022098 locus=Lus10022098.g ID=Lus10022098.BGIv1.0 annot-version=v1.0 ATGACCAGTGAAGGATCACAGCCAAACTCCCAACTACATGATCCAGCTGCTTCTGATCATATGCTGGATTGCTGGTTGGAATCTGTCTCCTATCTTCCAT CTTTCCTTGATGATACTAATGACATCAACAGCTATCCATGGTGGATTCCCCCTGATGAATTCAGCCACGACCCTCTTCTTCCCCCATCTACTATCAGTAA TCCCAGCCATCATCATCACCAGCTACAACAGAATCACCAGCTAAACCATGGTGGTGGTACCACATCAACAACAACAATGGCGGCTGCAACTCCACAAAGT CTTCCATCTCCGGATATTATTAGTACCTTCCAAACCATCCCAACTAGCCACCTTATTCAACAGGAAAACCCCATCACTAAATATGATCACCCACAAGCAT CAAACCTTCCCAGGAAAAGGAAACTACCCGATGTACCAGTGCCCAGACCAGCGCCGGCCAACTCCACCCATGTCAAGAAAAGCCAAAGCCAGACCCAGAG CCAGACCCAGAGCTGTGATGATCATCATCAAGACAGCAGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAAGCCTCTGCCGTAATTGAAAGC GGAGGAGGAACGGCAGCCGGCAGGAATATATAA
AA sequence Show only first row Show all	>Lus10022098 pacid=23146447 polypeptide=Lus10022098 locus=Lus10022098.g ID=Lus10022098.BGIv1.0 annot-version=v1.0 MTSEGSQPNSQLHDPAASDHMLDCWLESVSYLPSFLDDTNDINSYPWWIPPDEFSHDPLLPPSTISNPSHHHHQLQQNHQLNHGGGTTSTTTMAAATPQS LPSPDIISTFQTIPTSHLIQQENPITKYDHPQASNLPRKRKLPDVPVPRPAPANSTHVKKSQSQTQSQTQSCDDHHQDSSSGGGGGGGGGGGEASAVIES GGGTAAGRNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022098 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	2.4	0.9207
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	2.8	0.9107
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	7.8	0.9316
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	19.2	0.9276
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	24.0	0.9180
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	24.7	0.9074
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	26.5	0.8949
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	26.9	0.9158
AT1G30190			unknown protein		Lus10023301 [exp]	30.0	0.8996
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	30.0	0.8863

Compare expression of checked genes

Lus10022098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.