Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54130 803 / 0 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 783 / 0 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 218 / 4e-62 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT3G17470 150 / 7e-39 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001862 [exp] 1060 / 0 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 865 / 0 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 862 / 0 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 190 / 8e-54 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10002139 [exp] 157 / 8e-41 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10011252 [exp] 141 / 4e-39 AT1G54130 87 / 5e-20 RELA/SPOT homolog 3 (.1) Lus10028191 [exp] 126 / 1e-30 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 102 / 8e-23 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10008755 [exp] 71 / 7e-13 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168200 [exp] 873 / 0 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 869 / 0 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 221 / 5e-63 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.013G089000 [exp] 178 / 8e-48 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 145 / 2e-37 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10022102 pacid=23146480 polypeptide=Lus10022102 locus=Lus10022102.g ID=Lus10022102.BGIv1.0 annot-version=v1.0 ATGGGGGATAGCTTTGTCGATCCTGGTTATCAGCCTTATGCCAAGGAATTGTTGCTCGGTGCTCAGTTGAGGCACAAAATCTTTTGCCAGGATTTCGTCA TCAAGGCTTTTAACGAGGCTGAGAAAGCTCATAGAGGACAGACGCGGGCGAGCGGTGATCCTTACCTGCAGCATTGTGTGGAAACTGCTGTGTTGCTTGC AACCATCGGTGCGAACTCCACCATGGTTGCTGCTGGGCTTTTACACGATACTATTGATGATTCTTTCTTAAGTTACGACTATATTTTCAGGACCTTTGGT GCTGGTGTGGCTGATTTGGTTGAAGGGGTGTCAAAACTTAGTTACTTGAGTCAGCTTGCGCGCGAGAACAATACAGCTAGCAAAACTGAGGAGGCAGATC GGTTACATACAATGTTTCTAGCAATGGCAGATGCCAGAGCTGTACTGATTAAGCTAGCTGATCGATTGCACAACATGATGACCCTAGATGCATTGCCTTT GCCAAAGCAACAGAGGTTTGCGAAGGAGACTTTGGAAATCTTTGGTCCTTTGGCTAACCGCTTAGGGATCTCTGCATGGAAAGAACAGCTTGAAAATTTG TGCTTCAGGCATCTGAATCCTGACCAGCACAAAGATTTGTCATCCCAGCTCGTAAAATCTTTTGATGAGGCAGTGATTACTTCCGCGACAGAGCAATTGG ACCATGCCTTAAAGGAAGAAGCTATATCTTATCATGTGCTATCTGGTCGACATAAAAGTTTGTATAGCATATATCGCAAAATGTTGAAGAAAAAGCTGAA GACGGATGAGATCCATGACATTCACGGGCTTCGTTTGGTTGTGGAAAGTAAGGAAGACTGCTACAAGGCATTAAGAGTTGTTCATGAGTTATGGCCTGAA GTGCCTGGAAAGTTCAAGGACTACATAAGTCACCCCAAGTTCAATGGGTATCAATCTCTCCACACAATAGTCTTGGGTGATGGAGAAGTTCCACTTGAAG TCCAGATCAGAACGAAGGAGATGCATTTGCAGGCCGAGTTTGGATTTGCTGCCCATTGGAGGTACAAAGAGGGTGATTGCAAGCACCCTTCATTTGTACT GCAGATGGTTGAATGGGCTCGATGGGTCGTGACTTGGCAATGTGAGGCCATGAATAAAGACCGGTCGGCGATCTCTTGCGTTGATTCTGCAACTCCTCCT TGTGCATTCCCCGTTCATGCTGAAGATTGCAAATATTCTAGTAAACCTAATTGCAGCCTGGATGGACCAGTCTTTATCGTTATGATGGAGAACGATAAGA TGTCAGTGCAAGAGCTTCCAGCAAACTCGTGTATGATGGACCTGCTGGAAAGAGCTGGTGGAGTTAGCAATACAAGTTCACCATACGGCTTCCTTCACAT GAAGGATGAATTGAGGCCGAAACTTAACCATGTTCCTGTGAGTGATCCCAGCTGCAAGCTGAAGATGGGAGACTTGGTGGAGCTAAGCCCTGCAATTTCT GACAAATCACTAACCGAGTACAGGGAAGAGATACAGCGTATGTACAACAGGGGGCTCAGTGGCGTTTCAAGCACAGCCACTGGAGTTGCGGGTTGTAGAA GTTGA
AA sequence Show only first row Show all	>Lus10022102 pacid=23146480 polypeptide=Lus10022102 locus=Lus10022102.g ID=Lus10022102.BGIv1.0 annot-version=v1.0 MGDSFVDPGYQPYAKELLLGAQLRHKIFCQDFVIKAFNEAEKAHRGQTRASGDPYLQHCVETAVLLATIGANSTMVAAGLLHDTIDDSFLSYDYIFRTFG AGVADLVEGVSKLSYLSQLARENNTASKTEEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLPKQQRFAKETLEIFGPLANRLGISAWKEQLENL CFRHLNPDQHKDLSSQLVKSFDEAVITSATEQLDHALKEEAISYHVLSGRHKSLYSIYRKMLKKKLKTDEIHDIHGLRLVVESKEDCYKALRVVHELWPE VPGKFKDYISHPKFNGYQSLHTIVLGDGEVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCKHPSFVLQMVEWARWVVTWQCEAMNKDRSAISCVDSATPP CAFPVHAEDCKYSSKPNCSLDGPVFIVMMENDKMSVQELPANSCMMDLLERAGGVSNTSSPYGFLHMKDELRPKLNHVPVSDPSCKLKMGDLVELSPAIS DKSLTEYREEIQRMYNRGLSGVSSTATGVAGCRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	0	1
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	3.7	0.9288
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	4.5	0.9244
AT4G16640			Matrixin family protein (.1)		Lus10007478 [exp]	6.9	0.9115
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030597 [exp]	8.7	0.9005
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	8.8	0.9110
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	10.9	0.9334
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	13.0	0.9207
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	14.0	0.8921
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	15.0	0.9183
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10024583 [exp]	15.2	0.9018

Compare expression of checked genes

Lus10022102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.