Plant FIBer expression Database

Lus10022103 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54140 112 / 3e-33 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011251
[exp]
132 / 2e-41 AT1G54140 242 / 2e-82 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Lus10012411
[exp]
132 / 5e-41 AT1G54140 239 / 2e-81 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Lus10001863
[exp]
110 / 5e-34 AT1G54140 106 / 7e-31 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G168300
[exp]
120 / 2e-36 AT1G54140 262 / 1e-90 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF02291 TFIID-31kDa Transcription initiation factor IID, 31kD subunit
Representative CDS sequence
>Lus10022103 pacid=23146452 polypeptide=Lus10022103 locus=Lus10022103.g ID=Lus10022103.BGIv1.0 annot-version=v1.0
ATGGCCGAAGGAGATGAGCAAATGCCAAGAGATGCGAAGATTTTCAAATCACTCTTGAAATCAATGGGTGTTGAAGACTACGAACCTCGTGTTATGCACC
AGTTCCTGGAGTTGTGGTATCGTTACTTTATGGATGTATTGACAGATGCTCAAGTTTACTCGGAGCATGCTGGCAAGTCTACTATCGACACTGAAAGTTG
TCTCTAG
AA sequence
>Lus10022103 pacid=23146452 polypeptide=Lus10022103 locus=Lus10022103.g ID=Lus10022103.BGIv1.0 annot-version=v1.0
MAEGDEQMPRDAKIFKSLLKSMGVEDYEPRVMHQFLELWYRYFMDVLTDAQVYSEHAGKSTIDTESCL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54140 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA ... Lus10022103
[exp]
0 1
AT3G50210 2-oxoglutarate (2OG) and Fe(II... Lus10041597
[exp]
1.0 0.8748
AT5G02250 ATMTRNASEII, RN... ribonucleotide reductase 1, EM... Lus10010842
[exp]
8.1 0.8251
AT5G19450 CPK8, CDPK19 calcium-dependent protein kina... Lus10030134
[exp]
13.3 0.8487
AT5G45275 Major facilitator superfamily ... Lus10033280
[exp]
15.3 0.8389
AT3G48200 unknown protein Lus10008827
[exp]
15.7 0.8176
AT1G01320 Tetratricopeptide repeat (TPR)... Lus10020453
[exp]
18.0 0.7513
AT1G26480 GF14IOTA, GRF12 general regulatory factor 12 (... Lus10004652
[exp]
20.1 0.8263
AT3G59570 Ypt/Rab-GAP domain of gyp1p su... Lus10022963
[exp]
27.3 0.7438
AT3G15200 Tetratricopeptide repeat (TPR)... Lus10031270
[exp]
28.5 0.8052
AT5G48840 ATPTS, PANC ARABIDOPSIS THALIANA PANTOTHEN... Lus10038167
[exp]
32.0 0.7044

Lus10022103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.