Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72620 236 / 2e-76 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 228 / 3e-73 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 182 / 2e-55 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 180 / 1e-54 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 179 / 2e-54 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 173 / 1e-51 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 159 / 1e-46 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 143 / 1e-40 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 137 / 4e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 49 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019631 [exp] 457 / 2e-163 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 237 / 1e-76 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 187 / 2e-57 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 180 / 2e-54 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 176 / 3e-53 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 158 / 3e-46 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 140 / 2e-39 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 121 / 3e-32 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 103 / 3e-26 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168600 [exp] 249 / 2e-81 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 196 / 5e-61 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 191 / 3e-59 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 184 / 3e-56 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 184 / 4e-56 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 181 / 4e-55 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 152 / 7e-44 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 141 / 8e-40 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 141 / 1e-39 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 141 / 1e-39 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10022106 pacid=23146487 polypeptide=Lus10022106 locus=Lus10022106.g ID=Lus10022106.BGIv1.0 annot-version=v1.0 ATGGAAATCAACAACAACCGTCTCCCGCAGTTCCTCCGACGCCACTCTCTCCGGTCACTGCTCTCCTCCGCCGCCGCCAGCCTCCCAGTCTTGATGATGG CATTGTTGGCCAAATTGCTGGACACCCTTTTATCCCTATACTTCATGTCATGCAACATGTTTCCATCCACCATCAACTTAGACGACGACGACGATCAAAA CACAACGACAACCGTCCATTTCTGGATCACGGGCCACCGGAATGCCAACAAGCCGTCGATCTTGTTGATCCACGGGTTCGGAGGGAACTCAAGGTGGCAA TTCTACAACCAAGTTAGACATCTCTCCCAACCTTTCAACGTTTACATCCCAGATCTTCTCTACTTTGGCAAGTCCTATTCGAGCGGGTCGGAGAGGTCAA TCGAGTTCCAGGCTGATTGCATAGGGAAAGGGTTGAAGAAATTAGGGGTAGAGAGGTATAGCATTGTAGGGTTGAGCTACGGGGGGTACGTGGGTTATCG AATGGCGCAGGTATACGAGGAGGAGGTGGATAAAGTTGTGATTATAAGTTCAGGGATCTACCAAAGCAACCAACAGATGGTTGATCAATTGAAGACTCTT GGGGATGATGTCAAGATTGAGCAGCTTTTGGTGCCACAAAAGCCTGAGGATGTTAGAAAGATGGTTGAGCTTGCTATGTATAAGGCTGCACGTTTCCTAT TTACCCCCGATTTTATCCTCACGGGGTTTATTAAGGAAACGTTGCTAATATGGGGCGAGAAGGATCGAGTCTTTCCGTTGCATTTAGCCTATCAACTTGA GAGACATTTGGGGCCAAATGCAAGACTGGAGGTACTCAAGGAAACGGGGCATGCCGCCAACATAGATTCGCCCGAGGCAGTGAATAGATTGATAACATCA TTCGTGTCGTAG
AA sequence Show only first row Show all	>Lus10022106 pacid=23146487 polypeptide=Lus10022106 locus=Lus10022106.g ID=Lus10022106.BGIv1.0 annot-version=v1.0 MEINNNRLPQFLRRHSLRSLLSSAAASLPVLMMALLAKLLDTLLSLYFMSCNMFPSTINLDDDDDQNTTTTVHFWITGHRNANKPSILLIHGFGGNSRWQ FYNQVRHLSQPFNVYIPDLLYFGKSYSSGSERSIEFQADCIGKGLKKLGVERYSIVGLSYGGYVGYRMAQVYEEEVDKVVIISSGIYQSNQQMVDQLKTL GDDVKIEQLLVPQKPEDVRKMVELAMYKAARFLFTPDFILTGFIKETLLIWGEKDRVFPLHLAYQLERHLGPNARLEVLKETGHAANIDSPEAVNRLITS FVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	0	1
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	10.7	0.9945
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	12.2	0.9728
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Lus10026793 [exp]	13.3	0.9528
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	15.2	0.9941
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	18.6	0.9569
					Lus10027374 [exp]	19.7	0.9921
AT2G41905			unknown protein		Lus10042354 [exp]	21.8	0.9171
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	22.7	0.9921
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10029893 [exp]	24.4	0.9388
					Lus10043174 [exp]	25.4	0.9921

Compare expression of checked genes

Lus10022106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.