Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11450 335 / 1e-115 PPD5 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001861 [exp] 525 / 0 AT5G11450 342 / 7e-117 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10012413 [exp] 188 / 2e-60 AT5G11450 135 / 3e-40 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10003289 [exp] 52 / 1e-07 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10030326 [exp] 52 / 1e-07 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246500 [exp] 397 / 6e-140 AT5G11450 352 / 2e-122 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10022110 pacid=23146474 polypeptide=Lus10022110 locus=Lus10022110.g ID=Lus10022110.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTCTGCTCGCCTACTCTGTTTGCTTCCCGATATCAACAGCTCTCCTTCTTTAGGAGTGAGAGCAGCATGTCGCTAAACCAGAGGAAATGCT CTTGTAGTGCGTCTTCTCCATCATCAGCATCGTCATCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCGTCTTCAAGACC CAGTCCGAAGATAGGGGTTTTGAGAAGGGATTTGATGGTATTTGGTCTCTGTTCTTCTTTATCTGTGGCGGCTTTTCCATTATCAGAGTGTCTGGCAGAA GATGATCTGAAATTGTGTTCAATGGTTGATGAGATTAATGCATACAGTTACTCTTATCCAATGGAGTTGCAGTCCAAGAAGTTTGCCTTTAAATGGGCGG AATCCAGAAAGCCAGAACGGTATTCATCAGCTGCGCCATTGTCCCCTGATGCTCGGCTTCGGATTGTGTCGGAGCGTGTTGATTTCATTGACAACCTCAT CATTTCTGTTTCGATAGGCCCCCCAAATGTTCAGTTCATAAAATCAAAGGACAAGAGTGCCTGGAACGCAAGAGATGTTGCTGACTCTGTTTTGTCTGAC AAGTCTACTCTGCGAGTCACGTCAAGTCAGCGACTGGCGGAGAGTTCTCTTCTTGATGCACATAAAACGGAAGTTGATGGGGAACCTTACTGGTTCTACG AGTATCTTGTTCGCAAGTCACCTACCAAAGATGTTCAGGAATACCGCCATTATGTTACGTCAACAGCTGAACGAGATGGATACCTCTACTCGTTGAGTGC TTCCACTCTTAACAGAGAGTGGGGAAAGATGGGAGATGTGTTGGAGAGAACTGTGTCCTCATTTCGGCTTCTGCCTCCCACAGCTGAATATGTACCTCCA TTCAAAGACCCTTGGAGATTTTGGTGA
AA sequence Show only first row Show all	>Lus10022110 pacid=23146474 polypeptide=Lus10022110 locus=Lus10022110.g ID=Lus10022110.BGIv1.0 annot-version=v1.0 MAFLCSPTLFASRYQQLSFFRSESSMSLNQRKCSCSASSPSSASSSSSASSSSSSSSSSSSSSSSRPSPKIGVLRRDLMVFGLCSSLSVAAFPLSECLAE DDLKLCSMVDEINAYSYSYPMELQSKKFAFKWAESRKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVSIGPPNVQFIKSKDKSAWNARDVADSVLSD KSTLRVTSSQRLAESSLLDAHKTEVDGEPYWFYEYLVRKSPTKDVQEYRHYVTSTAERDGYLYSLSASTLNREWGKMGDVLERTVSSFRLLPPTAEYVPP FKDPWRFW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	0	1
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	1.0	0.9849
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	1.4	0.9826
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	2.4	0.9757
AT2G30695			unknown protein		Lus10008364 [exp]	2.4	0.9804
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	2.8	0.9713
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	4.0	0.9804
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	4.6	0.9719
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	7.1	0.9785
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	7.4	0.9659
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	7.9	0.9685

Compare expression of checked genes

Lus10022110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.