Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011706 [exp] 174 / 2e-55 ND / Lus10017731 [exp] 162 / 8e-52 ND 36 / 0.003 Lus10006889 [exp] 93 / 5e-24 ND / Lus10004128 [exp] 76 / 5e-16 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10014515 [exp] 68 / 1e-13 ND / Lus10006124 [exp] 54 / 1e-08 AT3G22520 340 / 4e-106 unknown protein Lus10029230 [exp] 42 / 4e-05 ND / Lus10024590 [exp] 40 / 0.0009 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119300 [exp] 75 / 9e-16 AT4G15180 2427 / 0.0 SET domain protein 2 (.1) Potri.017G041100 [exp] 66 / 7e-13 AT4G15180 2386 / 0.0 SET domain protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022112 pacid=23146485 polypeptide=Lus10022112 locus=Lus10022112.g ID=Lus10022112.BGIv1.0 annot-version=v1.0 ATGTTGACACTATGGTCAAAAATTCCGTGTAATGAAGGAACACGGCGTATTCCAAATGGAACACGGTGTGTTCCTCCGCTGAAATTGCCCGAGAAAGTTA CAGGGGCTGAACATGACCAGGAACATGGCCGTGTCCATGGAACACGGCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATA TGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTT CCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCC GTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGC ACGAGATTTGATTTGTTATTGGGGTTTATTTAGACTTATAATACGTTCTTCCTAA
AA sequence Show only first row Show all	>Lus10022112 pacid=23146485 polypeptide=Lus10022112 locus=Lus10022112.g ID=Lus10022112.BGIv1.0 annot-version=v1.0 MLTLWSKIPCNEGTRRIPNGTRCVPPLKLPEKVTGAEHDQEHGRVHGTRRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRV PYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARDLICYWGLFRLIIRSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022112 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10005050 [exp]	3.6	0.8090
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10013405 [exp]	5.8	0.7150
					Lus10003941 [exp]	6.5	0.8010
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	7.9	0.8010
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	9.2	0.8010
AT3G53240		AtRLP45	receptor like protein 45 (.1)		Lus10043328 [exp]	9.4	0.6932
					Lus10029758 [exp]	9.9	0.7796
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	10.2	0.8010
AT1G19835			Plant protein of unknown funct...		Lus10033813 [exp]	11.1	0.5881
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	11.2	0.8010

Compare expression of checked genes

Lus10022112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.