Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32630 226 / 8e-64 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT4G13350 198 / 3e-54 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT1G08680 183 / 5e-49 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT5G54310 71 / 1e-12 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G53710 64 / 2e-10 AGD6 ARF-GAP domain 6 (.1.2) AT2G35210 63 / 3e-10 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT4G05330 62 / 4e-10 AGD13 ARF-GAP domain 13 (.1) AT2G37550 62 / 1e-09 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT4G21160 60 / 2e-09 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G07940 60 / 3e-09 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017729 [exp] 238 / 8e-68 AT4G13350 457 / 3e-153 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10005686 [exp] 182 / 2e-48 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10020306 [exp] 181 / 2e-48 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10033090 [exp] 139 / 4e-34 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10038582 [exp] 74 / 2e-13 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 73 / 3e-13 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 71 / 3e-13 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 73 / 4e-13 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10000903 [exp] 63 / 5e-10 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035000 [exp] 415 / 4e-133 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.006G246100 [exp] 387 / 3e-122 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.018G076200 [exp] 278 / 8e-82 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.013G068300 [exp] 184 / 1e-48 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Potri.011G044100 [exp] 78 / 1e-14 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 77 / 3e-14 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 76 / 6e-14 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 67 / 5e-12 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 68 / 1e-11 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 60 / 1e-09 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10022113 pacid=23146501 polypeptide=Lus10022113 locus=Lus10022113.g ID=Lus10022113.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAAGAAAAGGAAGATGAGAGAATTGAAAAAATTATCCGTAGTCTTCTTAAACTCCCAGAGAACCGCAGGTGCATCAACTGCAATAACTTGG GGCCTCAGTATGTGTGCACAACCTTCTTAACATTCGTTTGCACAAATTGCAGCGGCGTGCATCGAGAATTCACGCATCGGATCAAATCTGTTTCGATGGC AAAATTTTCAACCGAAGAAGTCAGTGCTCTTCAGGCTGGAGGGAATGAGAGGGCAAGACAAATTTATTTCAAAGAATGGGATGCTCAGCGCAATTCTAAT CCCGATGGCAGCAACCTTCACAGGCTTCGAGATTTTATCAAGCATGTTTATGTCGAAAGAAAGTACACCGGGGAACGAAGTCATGATAAACTTAGAAAGC TAAGAGTGGGTGAGAGCGATGAGCCTTATGGTGGAAGGAAGTCAGGTATATTCTATGGGAGAAGTCCAAGTTATGCCATCACCAGAAGTCCAGGTCTTGG TTTGACCAAATGCCCAAGCTATGAGGTAACCCGGAGTCCAAGGTATGAGGTAACAAGGAGTCCGAGTTTTGAAGACAGGAGGTACGTTCGTGATAGATAT GGATCCAGTAGAAGAAGTGCAGACATAAACTTCCAGAATTATTATGATGAGATGAGGAGTCCTTATCAGCCTGAAAGTTCTCGATATAAGAGATCTCCAG TTCGATTTGAGGTTGTTGATGATAGATATCGAGATGACGAATGTAGAAATGAGAAGCCACCTGAAAGCGTTAGATCGTCACGTAAAGACCTTAGTTCTGC TAGTGGAAGAAGGTCACATGACTCTCAAAATGTACCGTCGATACAAGTAGAGAAACGGTTTAACACAAATGATGAGAAGGAAGCCGATGTTTCTGCTTGC AACAAGAGTACCACACCTTCTTCCACCAAGGCAGCAACATACAAGATTCCTTTGGAGGGAAAAAATCAGAATTCGGAAAGCTTGATTGATTTCAATAACG ATCCTACCTCCAATGGCTCAGCGACACCACCTCAAGCTGCAGAAAAACATCCTTCTACTGACAACTCTGTTGGTTCTTCTATAAAGAAAGAGCCTTTACC TCCAAAACCGAATACTGTTGAATTTTTACTCTTTGAGTTATCGATTCCCCCGGTCACACCATCTTCCAATAATGTTTCTGATGTGGATAGAACTCATTCA TTGACTTCTTCAGAAGGCTATTTGACCGATGTCAATGTTTTTCCAACAAGTAATACATCTGAGGGAGTGCCAACCAATAATGATGGACCTTCAACAGTTG AATCTGCTAGAAACATGTCTGTAGAAAATGTTCCAACAACTGAGTCTTTGGAGCAAATGTCAGTGGTACCCTATCAAGGACCTGCTCCCACTAGTGTCCT ACCAAGTGAAAGGTATGAGGGCATAACAGTTCGCCCATCAACTATGTCTGTAGGACAAATTTCAGAATCATTCAACAATACTAATGCTTCGACGGTTGAA TTCGGAAACAACAAGTTTACTGAAGGATATTTGGGAGCTACAGCCTATAAGCAGTCACTATCATTGTTTGATGGGTTCAATACCACTTCAATTCCATCAG TAGTAACGAATTTACATGTAGAACCTTCTAATGGAAGCCTACCAAAAGCACCGTCTGATCTAATTGGAGGATCCTCTTTTATAGCACAGAAAAATCACAA GGTTGAGATGCAAGATGAAATTTCGACAAAGCCTTCCACAACTGATAATTCTACTAGGCAAGGGCATCAACTTTCTATAGCTGTTGGGGAGATACGAAAC CAGCCATGTACTTCCTCAAAAACTTGTAATGAGCGAAAACCTGCAACAACTTCAGCTGAAACATCTCAACAAATCTCTCAAGCACGTCAAGAGCCTAATT TTGGAATTAAAAAACCATCTACTACTTCAGAAACCAAGTCTACTCAGAGGAAGGAACTTCCAATGGACCTCTTTGCGAGCAGCTTTATGCCAAACACTGG GCCTGCACCAAATTGGCATATTAGCAACCCATACAACATGGGATTTGGTACACAACATTATCATAGTCCAATGGCGGTCATGGCTTACCCTAATCCCATC AAGTCAACAAACCCATTTGACTTCAACAATGATGATTCCCAGAAACACAGTCCATCATTTGGTTCTACGGGAGATTTGAGAGGTGCAGTTTTTGATGTGC CACCTCGTCCAGTCTTGTTTCCTAGCTCCAGCATGGGTCACATGTCTTCAGCTATGATCTCAGATACATCGCAAATTCCTTCACAGTCTTTTCCATTTCA ATCGACAAAACCTTCGGATGGCAGGGAGGTGGGTTTGGTGATGATGAGGACCCTTTCGCTTCATTCAATGCGATTCAGCAAATACCCGGGGCGAACTCAT ATTCGGCTCGCCAAAACTCTTTTCCCTCAAGGGGTGGAAATCCGTTTGGATAGATAA
AA sequence Show only first row Show all	>Lus10022113 pacid=23146501 polypeptide=Lus10022113 locus=Lus10022113.g ID=Lus10022113.BGIv1.0 annot-version=v1.0 MVKKEKEDERIEKIIRSLLKLPENRRCINCNNLGPQYVCTTFLTFVCTNCSGVHREFTHRIKSVSMAKFSTEEVSALQAGGNERARQIYFKEWDAQRNSN PDGSNLHRLRDFIKHVYVERKYTGERSHDKLRKLRVGESDEPYGGRKSGIFYGRSPSYAITRSPGLGLTKCPSYEVTRSPRYEVTRSPSFEDRRYVRDRY GSSRRSADINFQNYYDEMRSPYQPESSRYKRSPVRFEVVDDRYRDDECRNEKPPESVRSSRKDLSSASGRRSHDSQNVPSIQVEKRFNTNDEKEADVSAC NKSTTPSSTKAATYKIPLEGKNQNSESLIDFNNDPTSNGSATPPQAAEKHPSTDNSVGSSIKKEPLPPKPNTVEFLLFELSIPPVTPSSNNVSDVDRTHS LTSSEGYLTDVNVFPTSNTSEGVPTNNDGPSTVESARNMSVENVPTTESLEQMSVVPYQGPAPTSVLPSERYEGITVRPSTMSVGQISESFNNTNASTVE FGNNKFTEGYLGATAYKQSLSLFDGFNTTSIPSVVTNLHVEPSNGSLPKAPSDLIGGSSFIAQKNHKVEMQDEISTKPSTTDNSTRQGHQLSIAVGEIRN QPCTSSKTCNERKPATTSAETSQQISQARQEPNFGIKKPSTTSETKSTQRKELPMDLFASSFMPNTGPAPNWHISNPYNMGFGTQHYHSPMAVMAYPNPI KSTNPFDFNNDDSQKHSPSFGSTGDLRGAVFDVPPRPVLFPSSSMGHMSSAMISDTSQIPSQSFPFQSTKPSDGREVGLVMMRTLSLHSMRFSKYPGRTH IRLAKTLFPQGVEIRLDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32630			ArfGap/RecO-like zinc finger d...		Lus10022113 [exp]	0	1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	4.5	0.9550
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	6.5	0.9473
AT2G40460			Major facilitator superfamily ...		Lus10029063 [exp]	7.3	0.7703
					Lus10027602 [exp]	7.9	0.9473
					Lus10003285 [exp]	9.2	0.9473
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	10.2	0.9473
					Lus10004996 [exp]	11.2	0.9473
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	12.1	0.9473
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	13.0	0.9473
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	13.7	0.9473

Compare expression of checked genes

Lus10022113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.