Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25590 609 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 520 / 2e-179 unknown protein AT1G02110 196 / 2e-53 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 190 / 9e-51 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT3G60320 162 / 3e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 142 / 3e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 135 / 1e-32 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 132 / 9e-32 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G21740 124 / 5e-29 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 123 / 5e-29 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037901 [exp] 717 / 0 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10038627 [exp] 590 / 0 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 569 / 0 AT1G52320 652 / 0.0 unknown protein Lus10035887 [exp] 563 / 0 AT1G52320 747 / 0.0 unknown protein Lus10002864 [exp] 389 / 4e-131 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10000014 [exp] 251 / 2e-79 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041884 [exp] 189 / 2e-52 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 190 / 1e-51 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024007 [exp] 172 / 1e-44 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036400 [exp] 716 / 0 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 698 / 0 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 565 / 0 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 548 / 0 AT1G52320 615 / 0.0 unknown protein Potri.005G112300 [exp] 194 / 4e-53 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 192 / 2e-52 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 187 / 5e-50 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 185 / 1e-49 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 182 / 3e-48 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 169 / 6e-44 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10022116 pacid=23146465 polypeptide=Lus10022116 locus=Lus10022116.g ID=Lus10022116.BGIv1.0 annot-version=v1.0 ATGGGTTGCGCGCAGTCTAAGGTGGATAACGAGGAATCAGTAGCGAGATGCAAGGACCGCAAAATCCTGATGAAGGAAGCAGTGACTGCCAGGAACGCCT TCGCCGCCGCTCATTCCGGCTACGCCATGTCCTTGAAGAATACCGGTGCCGCCCTCAGCGATTACGCTTACGGTGAAGCTGACCCTTCTTCTCAGCCCCA TCTTCAGCATAACCACCAACAGCAGCAGCAGCAGCCGCAGCCTCCGCTCTCCGGACAACCGCCTCCGCCGCCGCCTCCTCCTCCGCCCTCTATTGATAAC CTCCCGCCGCCTCCTCCCCCGCTCCCGAGCTTCTCCCCCAGTCCTAGCCCTCCAATTAAACGCGCCATTAGCATGCCCGCTATGAAGCATAGGGCCCAAA GGGATTTCGATTCCCTCGCCATTGCAGAAGAAGGAGAGGAGGAGGAGGAAGAAGAAGGATTGGATCACGGCGTGCGAAATGGAAATAAAAAGAGTAATAT GGAAAATCATCCGGTGCCGCCGATGCCGGAGGCGAAGAGCATGAATTGGGATTATTTCTTCATGGTGGACGACGACCCCACCCACCTGGAACCCGACGAT GACGAGGAGGCTGGGACGCCAAACCATAATAATGACACTAATGTTGTGGATGACGAGGATGAACCCAAGACGCCGGAGACAGCGCCGGAGAAGGGTAAGG CCAAGGAGGATGAAGAGGATCTTATCGGGAAGCAACAGATTGAACACGCCCAATCAGTGCCATTGGATTTCATGAGGGCTAGGAAGAAGGCTGGGAGTGA TGTGGACTTGATGGAGGTTTTGGGTCAGATTGATGATCATTTCCTTAAAGCATCTGAGAGTGCTCAGGTGGTCTGCAAAATGCTAGAAGCAACTCGCCTT CATTACGACTCCAATTTCGCCGACAATCGAGGGCACATCGATCATTCTGCAAGAGTTATGCGTGTTATTACTTGGAATAGATCTTTCAAGGGCATAAGCG GTGGTGGAGAAGGAGGTGCCAAAGATGACTTTGACTCTGAAGATCTTGAAACTCATGCCACTGTGTTAGATAAGTTGTTGGCATGGGAAAAGAAACTCTA TGATGAAGTCAAGCAAGGTGAGCTTATGAAGCTGGAGTACAAAAGGAAGGTTGGATTGCTTAATAAGCAGAAGAAACGAGGTGCTAGTGCTGAATCCTTG GAGAAGACGAAGGCTGCTGTGAGTCATTTGCATACCAGATATATAGTTGACATGCAGTCCATGGACTCCACTGTTTCAGAAGTTAACCGTATACGTGATG AGCAGCTGTATCCTAAACTCGTTGCTCTTGTTGAAGGGATGTCAAATATGTGGGGAAACATGTCCATACACCATGACAGCCAGCTGAAGATTGTGACAGA CCTCAAATCGCTCGAGGTTTCCCATGCGATCAAAGAAACAAGCAGGCAGCACCATGAGCAAACAACCCAGCTATGTGATGTGGTTGAGAAATGGAATGCA GATTTCGAGAAGCTTGTGAGCCATCAAAAGCAATATATCAATTACTTGAACAGTTGGTTAAAGCTAAACCTTATCCCCATTGAAAGCAGCTTGAAAGAGA AAATGTCATCACCACCAAGAGTCCAGAATCCCCCTATCCAGCCCCTCCTCCAAGCATGGCACGATCATCTTGAAAGGCTTCCAGACGAGCTTGCCAAGTC GGCAATCTCATCCTTTGCAGCTGTAATCAGAGCCATCAAAGTCCACCAGGAAGAAGAGATGAAGCTGAAGGAGAAATGCGAGGAAACTAGAAAGGAGTAT ATCCGAAAGCGGCAGGCTTTTGAGGAATGGCACCATAAGTATGTTATGCGGAGAGCCCCATCTGAGGAGACGGATGCTGCCGATAGAGTTGAAGATGCAA ACCCAAAGGATCCTGTTGCAGAGAGGCAATTTGCAGTAGAGAGCCTGCAGAAAACACTAGAAGAGGAGGTTGAAGCTCATCAGAGGCATTGCCTACAAGT TAGGGAGAAGTCACTTGGAAGCCTCAAGATTCGTCTACCCGAGTTGTTTCGGGCTATGTCTGACTATTCGCATGCCTGTTATGATACGTATGAGAGGCTG AGATCAATCACTCATGTGAAGAAGAACACAAATCGAGGTCCCTCACGTGACAATGCGACTTAA
AA sequence Show only first row Show all	>Lus10022116 pacid=23146465 polypeptide=Lus10022116 locus=Lus10022116.g ID=Lus10022116.BGIv1.0 annot-version=v1.0 MGCAQSKVDNEESVARCKDRKILMKEAVTARNAFAAAHSGYAMSLKNTGAALSDYAYGEADPSSQPHLQHNHQQQQQQPQPPLSGQPPPPPPPPPPSIDN LPPPPPPLPSFSPSPSPPIKRAISMPAMKHRAQRDFDSLAIAEEGEEEEEEEGLDHGVRNGNKKSNMENHPVPPMPEAKSMNWDYFFMVDDDPTHLEPDD DEEAGTPNHNNDTNVVDDEDEPKTPETAPEKGKAKEDEEDLIGKQQIEHAQSVPLDFMRARKKAGSDVDLMEVLGQIDDHFLKASESAQVVCKMLEATRL HYDSNFADNRGHIDHSARVMRVITWNRSFKGISGGGEGGAKDDFDSEDLETHATVLDKLLAWEKKLYDEVKQGELMKLEYKRKVGLLNKQKKRGASAESL EKTKAAVSHLHTRYIVDMQSMDSTVSEVNRIRDEQLYPKLVALVEGMSNMWGNMSIHHDSQLKIVTDLKSLEVSHAIKETSRQHHEQTTQLCDVVEKWNA DFEKLVSHQKQYINYLNSWLKLNLIPIESSLKEKMSSPPRVQNPPIQPLLQAWHDHLERLPDELAKSAISSFAAVIRAIKVHQEEEMKLKEKCEETRKEY IRKRQAFEEWHHKYVMRRAPSEETDAADRVEDANPKDPVAERQFAVESLQKTLEEEVEAHQRHCLQVREKSLGSLKIRLPELFRAMSDYSHACYDTYERL RSITHVKKNTNRGPSRDNAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	0	1
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	1.0	0.9785
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	1.4	0.9641
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	2.4	0.9574
AT2G43990			unknown protein		Lus10008351 [exp]	2.8	0.9540
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	5.0	0.9527
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	7.1	0.9449
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10000854 [exp]	7.7	0.9441
AT3G22760	CPP	SOL1	Tesmin/TSO1-like CXC domain-co...		Lus10039358 [exp]	8.0	0.9467
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002895 [exp]	11.7	0.9517
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	11.8	0.9362

Compare expression of checked genes

Lus10022116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.