Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022119 pacid=23146499 polypeptide=Lus10022119 locus=Lus10022119.g ID=Lus10022119.BGIv1.0 annot-version=v1.0 ATGTTAACCCCAGCTCACATGCATCGGCAAATTAAGACTATGCTTTACTCTGGCTGCTCAGCACCCCTTAGTTTCTGCAATGTTGACCTTGTGTTCATTC CTCTCCGTCACGGAGACGACTTTGTCTTGTTAATCACCCACTACATGAATAAGAGGCGTGTGTTCCTAGACAAGAAGAAGGTCTTCGATTTTGAGAAGGT GTATTCCAGGGTTCCAAATCGTGTGTTTGAGGTCATATATTCATTCTTCATGCCATTTGGGCGACTAAACCTCATCCTTTTCCCCATGAAAAAGTACAAG CAAGTTCAACAATGTGATAAGTCAACTTCTGGCTCTTATGTCCTGAATTGGTGTCTATCATTTGAAGGAAAATACTTTGGCGAAATGAGCTCCCTGTGA
AA sequence Show only first row Show all	>Lus10022119 pacid=23146499 polypeptide=Lus10022119 locus=Lus10022119.g ID=Lus10022119.BGIv1.0 annot-version=v1.0 MLTPAHMHRQIKTMLYSGCSAPLSFCNVDLVFIPLRHGDDFVLLITHYMNKRRVFLDKKKVFDFEKVYSRVPNRVFEVIYSFFMPFGRLNLILFPMKKYK QVQQCDKSTSGSYVLNWCLSFEGKYFGEMSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022119 [exp]	0	1
					Lus10035267 [exp]	7.7	0.8519
					Lus10029781 [exp]	8.5	0.8134
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	10.2	0.8775
AT1G04390			BTB/POZ domain-containing prot...		Lus10002546 [exp]	12.1	0.8597
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	23.4	0.8567
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	29.0	0.8376
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016468 [exp]	33.5	0.8310
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	36.6	0.8530
AT5G52545			unknown protein		Lus10014958 [exp]	40.0	0.8248
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	42.1	0.8479

Compare expression of checked genes

Lus10022119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.