Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20540 344 / 2e-116 MEF21 mitochondrial editing factor 21 (.1) AT2G29760 239 / 8e-74 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 230 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 233 / 6e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 231 / 8e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 228 / 3e-71 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 234 / 4e-71 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 228 / 1e-70 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 226 / 2e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05750 224 / 6e-70 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030125 [exp] 550 / 0 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10030225 [exp] 236 / 3e-76 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007684 [exp] 227 / 5e-76 AT2G20540 170 / 1e-51 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 239 / 1e-75 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017243 [exp] 233 / 4e-73 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000117 [exp] 228 / 6e-73 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10006628 [exp] 228 / 1e-72 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021069 [exp] 228 / 2e-71 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 228 / 2e-71 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035900 [exp] 418 / 3e-145 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.008G121400 [exp] 258 / 5e-83 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 247 / 1e-77 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 236 / 2e-74 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 235 / 2e-74 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G089400 [exp] 234 / 6e-74 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 237 / 1e-73 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G217600 [exp] 233 / 3e-73 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 234 / 6e-73 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 234 / 1e-72 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022124 pacid=23146495 polypeptide=Lus10022124 locus=Lus10022124.g ID=Lus10022124.BGIv1.0 annot-version=v1.0 ATGTACTGTGATAAAAATGGGTTGTTGAGGAAAACCAACATCTGCAATGCACTGATGGAGATGTATGCAAAATGCGGCTGCATTGATCAAGCCCGCCAGT TGTTCGATCAAATGCGCAAAAGGGATGTGATATCTTGGAGCACCATGATTGGAGGCCTGGCAAATCACGGAAAGGCCCTTGACGCTATCAACATGTTCGA GAGAATGAAGCTCCAGGGGATTGAGCCGAATGGAATTACGTTTCTGGGTCTTCTATCTGCATGTGGTCACGTTGGTTTATGGCAGCAAGGTGTGAGGTTC TTTGACTATATGCGAGATGAGTGCCTCATAGAGCCTGTAATTGAGCACTTTGGAGTTCTGGTTGATCTTCTTGGACGAGCAGGGCAGCTCAGCCATGCTC TTAACGTTATAGAACAGATGCCAATGAGACCTGATTCGAAGATTTGGGGTTCGCTGTTGAGTTCTTGCAGGGCTCATGGGAATCTGGATATCGCTGTGGT TGCAATGAAGCACCTTGAAGAGCTGGAACCAGAAGACACGGGGAATTATGTTCTGCTTTCGAATATATATGCTGACCTAGGTAAGTGGGATGGTGTTTCA AGAATGAGGACACTAATACGAAGCAAGAGCATGAAGAAAACTCCAGGGTGTAGCTTGATCGAAATCGACAATGTAGCTACTGAGTTCTCTTCTGGCGATG ATTCGAAGCCCTTCTCAAGACAGATCTTCAAGTTGCTAGAGATGCTGACTTCTTGTGAGGAGATAAGTGATCATATACTTGACATCATCCCCGAGGATGC AGGCAGCTGA
AA sequence Show only first row Show all	>Lus10022124 pacid=23146495 polypeptide=Lus10022124 locus=Lus10022124.g ID=Lus10022124.BGIv1.0 annot-version=v1.0 MYCDKNGLLRKTNICNALMEMYAKCGCIDQARQLFDQMRKRDVISWSTMIGGLANHGKALDAINMFERMKLQGIEPNGITFLGLLSACGHVGLWQQGVRF FDYMRDECLIEPVIEHFGVLVDLLGRAGQLSHALNVIEQMPMRPDSKIWGSLLSSCRAHGNLDIAVVAMKHLEELEPEDTGNYVLLSNIYADLGKWDGVS RMRTLIRSKSMKKTPGCSLIEIDNVATEFSSGDDSKPFSRQIFKLLEMLTSCEEISDHILDIIPEDAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10022124 [exp]	0	1
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	9.7	0.6984
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	11.6	0.6920
AT5G66360		DIM1B	adenosine dimethyl transferase...		Lus10041797 [exp]	15.0	0.6754
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	22.0	0.6692
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	37.4	0.6846
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	41.0	0.6684
AT3G15395			unknown protein		Lus10027849 [exp]	41.5	0.6602
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	48.8	0.6452
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	55.5	0.6426
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	59.0	0.6450

Compare expression of checked genes

Lus10022124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.