Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11490 1170 / 0 adaptin family protein (.1.2) AT4G23460 338 / 1e-98 Adaptin family protein (.1) AT4G11380 330 / 7e-96 Adaptin family protein (.1.2) AT3G15130 144 / 4e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 108 / 7e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 107 / 3e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71420 104 / 2e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 100 / 1e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G53360 101 / 2e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 99 / 1e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011675 [exp] 1018 / 0 AT5G11490 897 / 0.0 adaptin family protein (.1.2) Lus10032286 [exp] 335 / 2e-97 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 334 / 5e-97 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10028775 [exp] 333 / 9e-97 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 330 / 7e-96 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10007682 [exp] 198 / 1e-57 AT3G15130 288 / 9e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030124 [exp] 156 / 7e-40 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012206 [exp] 114 / 1e-25 AT5G52630 786 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10011323 [exp] 111 / 1e-24 AT5G52630 790 / 0.0 mitochondrial RNAediting factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243100 [exp] 1216 / 0 AT5G11490 1355 / 0.0 adaptin family protein (.1.2) Potri.001G101400 [exp] 348 / 6e-102 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 335 / 1e-97 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.006G244500 [exp] 202 / 7e-54 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G053500 [exp] 109 / 4e-24 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.011G052300 [exp] 105 / 5e-23 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 106 / 8e-23 AT3G22690 1050 / 0.0 unknown protein Potri.010G136200 [exp] 102 / 1e-21 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G001200 [exp] 100 / 2e-21 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 99 / 2e-20 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [flax] [poplar] APCOP-app_sub PF09066 [flax] [poplar] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10022125 pacid=23146464 polypeptide=Lus10022125 locus=Lus10022125.g ID=Lus10022125.BGIv1.0 annot-version=v1.0 ATGAAAGAATTTTCTCTTCCAACGCTGCTGCGACAGAGGCAGATATATGCGGAAATATTGAGAGGCTGCTCAAAGAATCAGCTGCTGGAGCAAGGAGTTC AAGTTCACGGCGCTTTAGTCTCTATGGGGTTTGGGTTTGATTCGATGCTAAGCAATGACCTGATAGATATGTATGGAAAATGCCGTCGAGTGGTTCTAGC ACGCCATGTGTTCGACAGAATGCCTGAAAAGAACTTGGTTGCTTGGACGTCTCTAATGTGTGGGTACGTACAAAATGGATACCCGGAAGAGTCGTTATCT CTATTCTCCCAGTTGGGATCAACTGGGCTTAAACCAAATGATTTCACTCTTTCCACAAATCTTAAAGCTTGCGGAATGCTGAGTGTTCCTGGGATCGGTA TGCAACTTCATGACATCTGTGTAAAAACTGCATACGATTGGAAGACGGTAGTAGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCAA ATACGGCAAGTACTGGAGGAGATGGGGAGAAGAATGAAACAAGAGCTAGGGTATGTGAACGAAGTAAAACATGCATTACACGACATTGATGAAGAATCGA TGCAAGAGAGCCTAAGACTTCATAGTGAGAAGTTGGCGATTGGGATGGCATTGGTTTGTGGAGGGTGGGAGAAGAGAAGGGTGATCCGTGTGTTCAAGAA CTTGAGAGTTTGTGTAGACTGTCATGAATTCATCAAAGGACTGTCAAGGATATTACAAGTGGTGTTCGTGGTAAGAGATGCTAACAGATTTCACAGGTTT CATTTGCGCCACTATCAACCCAGAGGTACTGTGTTCTACTTGCTGAAGGTCATGGCTCCTCCGGCGCAGTCCTCGCGGTATCCGTCGCCATCTCAACCAT CCGGGAAAGGTGAAGTGGCGGATTTGAGATTGCAGCTCCGGCAGCTCGCCGGGAGCCGAGCCCCTGGAGTGGATGATTCGAAGCGGGAGCTCTTCAAGAA AGTAATTTCGTACATGACGATCGGGGTCGATGTCTCGTCCCTCTTCGGGGAGATAGTCATGTGCTCCGTAACGCCAGATATTGTGCTCAAGAAAATGTGC TACCTCTATGTTGGGAATTATGCCAAGGTCAACCCTGATCTTGCTCTTTTGACTATTAATTTCCTTCAACGAGATTGCAAAGACCAGGACCCGATGATCC GAGGGCTTGCTTTGAGGAGCTTGAGTTCCCTACGAGTTGCGAATCTAGTGGAGTATTTGGTAGGGCCTTTAGGCTCCGGGTTGAAAGATAACAATGCTTA TGTCAGGACGGTGGCTGTTATGGGAGCTCTTAAGTTGTATCACATATCAGCTTCAACTTGTGTTGATGCAGATTTTCCAGCAATTTTGAAGCATTTGATG CTCAATGACTCTGATGCTCAGGTTGTTGTGAATTGTATATCTGCATTGCAAGAGATATGGAACTCTGAATCAAGCACCTCTGAGGAAGCAGCGAGGGAGA AAGAAGGTTTAATTAGCAAGCCCTTTGTGTATTACCTTTTGAATAGGCTCAGAGAGTTCAATGAATGGGGCCAGTGTCTTGTGCTTGAGTTAGTTGCCAA ATATGTGCCATCTGAAAGCAATGAGACTTTCGACATCATGAATCTCCTTGAAGATAGACTTCAGCATGCAAATGGTGCTGTTGTTTTGTCAACCATCAAA GTATTTCTTCAGCTGACTTTGTCCATGGCTGATGTTCACCAGGAGGTATATGAACGTATCAAAGCCCCTCTGCTTACCCTTGTGAGTTCCGGAAGTCCAG AGCAATCTTATGCGGTATTAAGCCACCTTCACCTCCTGGTGATGCGTGCTCCTTATATATTTGCTTCAGATTACAAACACTTCTACTGCCAGTACAACGA GGCTTCATATGTAAAAAAATTGAAGCTTGAGATGTTGACAGCTGTTGCAAATGAAAGTAATACTTATGAGATTGTCACTGAATTATGCGAGTATGCTGCA AACGTTGATGTTGCTATTGCACGAGAATCAATTCGGGCTGTTGGAAAAATTGCACTGCAGCAGTATGATGTGAATGCTATTGTTGATAGGCTTCTTCAGT TTCTGGAGATGGAAAAGGACTATGTAACTGCTGAAGCTCTGGTTCTTGTCAAAGATTTGCTAAGAAAATACCCTCAATGGAGTCACGATTGCATTGCTGT TGTTGGGAATATAAGTAGCAACAATGTGCAAGAGCCCAAGGCAAAAGCAGCTCTTATATGGATGTTGGGTGAATATGCACAAGACATGGATGATGCTCCT TACATATTAGAAAGCCTGGCTGAGAATTGGGAAGAGGATTCTCCTGAGGTCCGTTTGCACCTTCTTACAGCAGTCATGAAGTGCTTTTTTAGAAGACCAC CTGAGACTCGGAAAGCTTTAGGAATTGCATTGGCTGCTGGCCTGGCAGATTTTCATCAGGATGTTCATGATAGAGCGTTATTCTACTATAGGCTACTACA ACATGATGTATCCAGTGCTGAGCGTGTTGTGAATCCTCCAAAGCAAGCTGTTTCCGTCTTTGCTGATACTCAAAGCAATGAAGTCAAAGATCGCATATTT GATGAATTTAACAGTTTATCTGTTGTGTACCAGAAGCCATCATATATGTTCACCGATAAGGAGCACCGGGGACCGTTTGAGTTTTCAGATGATATTGGCA ATATAACAGCTGGGACAGAGCCAGAACATGAGGCTCCAGCTAGCACTGTTGAGGCAAATGAAACTAGTGATCTGCTATTGAGTACCTCAGAGAAGGACGA AAACAAAGCACTGGTTACTAACGGCTCAGATTATACTGCTCCCTTGTATGATACATCATCTGTAACTGTCCAGTCGGAGCAGGCACTTGCAAGCCTTATA GGAACAGATCCAGCGCCACAGTCTAGCTTGGCAATTGATGATCTATTACTTGGTCTAGATCTAACAGCACCATCGGCACCTGCTACTTTACCTCGTACAT TGAAGCTCAATGCAAGAGCTGTCCTAGATGCAGGAAGCTTCCAGCAAAAATGGCGGGAACTGCCTGTAGCTGTATCCGAGGAAGGCGAGTTAAGTCGAGA GGGTGCAGCGGCATTGACAACAGCTCAAGCACTCCTCCAGCACATGCAAGGGAATAGCATCCAGTGCATAGCTTCGGGGGGGCAGTCACCTAACTTCAAG TTTTTCTTCTTTGCACAGAAAGCAGAGGAAGCATCCATGTTTCTTGTAGAGTGTAAAATCAATACATCGACAGCCAAAGCACAAGTATGTATAAAAGCCG AGGATCAGAACACGTCCCAGGAATTCTCAACTCTGTTCCTATCAGCTTTGTCCAAGTTCGGCGTGTCATGA
AA sequence Show only first row Show all	>Lus10022125 pacid=23146464 polypeptide=Lus10022125 locus=Lus10022125.g ID=Lus10022125.BGIv1.0 annot-version=v1.0 MKEFSLPTLLRQRQIYAEILRGCSKNQLLEQGVQVHGALVSMGFGFDSMLSNDLIDMYGKCRRVVLARHVFDRMPEKNLVAWTSLMCGYVQNGYPEESLS LFSQLGSTGLKPNDFTLSTNLKACGMLSVPGIGMQLHDICVKTAYDWKTVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQ IRQVLEEMGRRMKQELGYVNEVKHALHDIDEESMQESLRLHSEKLAIGMALVCGGWEKRRVIRVFKNLRVCVDCHEFIKGLSRILQVVFVVRDANRFHRF HLRHYQPRGTVFYLLKVMAPPAQSSRYPSPSQPSGKGEVADLRLQLRQLAGSRAPGVDDSKRELFKKVISYMTIGVDVSSLFGEIVMCSVTPDIVLKKMC YLYVGNYAKVNPDLALLTINFLQRDCKDQDPMIRGLALRSLSSLRVANLVEYLVGPLGSGLKDNNAYVRTVAVMGALKLYHISASTCVDADFPAILKHLM LNDSDAQVVVNCISALQEIWNSESSTSEEAAREKEGLISKPFVYYLLNRLREFNEWGQCLVLELVAKYVPSESNETFDIMNLLEDRLQHANGAVVLSTIK VFLQLTLSMADVHQEVYERIKAPLLTLVSSGSPEQSYAVLSHLHLLVMRAPYIFASDYKHFYCQYNEASYVKKLKLEMLTAVANESNTYEIVTELCEYAA NVDVAIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGNISSNNVQEPKAKAALIWMLGEYAQDMDDAP YILESLAENWEEDSPEVRLHLLTAVMKCFFRRPPETRKALGIALAAGLADFHQDVHDRALFYYRLLQHDVSSAERVVNPPKQAVSVFADTQSNEVKDRIF DEFNSLSVVYQKPSYMFTDKEHRGPFEFSDDIGNITAGTEPEHEAPASTVEANETSDLLLSTSEKDENKALVTNGSDYTAPLYDTSSVTVQSEQALASLI GTDPAPQSSLAIDDLLLGLDLTAPSAPATLPRTLKLNARAVLDAGSFQQKWRELPVAVSEEGELSREGAAALTTAQALLQHMQGNSIQCIASGGQSPNFK FFFFAQKAEEASMFLVECKINTSTAKAQVCIKAEDQNTSQEFSTLFLSALSKFGVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	0	1
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	1.0	0.9153
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	2.0	0.9037
AT3G15160			unknown protein		Lus10040027 [exp]	2.8	0.8871
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010295 [exp]	3.2	0.8831
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	5.5	0.8810
AT5G65620			Zincin-like metalloproteases f...		Lus10019236 [exp]	7.7	0.8543
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	10.5	0.8652
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	11.1	0.8944
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	12.4	0.8349
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	13.7	0.8527

Compare expression of checked genes

Lus10022125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.