Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11480 417 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22870 281 / 4e-94 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58370 99 / 5e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G08410 45 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 44 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011673 [exp] 598 / 0 AT5G11480 418 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011703 [exp] 285 / 1e-95 AT2G22870 427 / 5e-152 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039653 [exp] 280 / 1e-93 AT2G22870 426 / 2e-151 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009919 [exp] 101 / 6e-24 AT5G58370 473 / 9e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10004103 [exp] 42 / 0.0005 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 42 / 0.0006 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037000 [exp] 452 / 3e-161 AT5G11480 421 / 7e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G243200 [exp] 442 / 2e-157 AT5G11480 422 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G006300 [exp] 291 / 5e-98 AT2G22870 434 / 2e-154 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G006501 [exp] 129 / 3e-37 AT2G22870 199 / 2e-65 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G007450 [exp] 97 / 2e-25 AT2G22870 131 / 3e-39 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G128000 [exp] 101 / 9e-24 AT5G58370 461 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10022126 pacid=23146458 polypeptide=Lus10022126 locus=Lus10022126.g ID=Lus10022126.BGIv1.0 annot-version=v1.0 ATGGCGGTTCTTATGCATCATCTCCCGAAGCTCCAGTTATGTACCTCCATCTTCACCCGCCCGTCTCCATCTCTAACCCGCCATTTCAATTCAATCCTGT GCGCTAAGCTCAGTCTTCCCACCTTTATTAGACCCCAATCTGCCCTATCCGCCGTGGAGCCCATCCCGGTCTCCCAGCTTGTGGACCCGCCGGATGAAAC CCAGGTGCCTATTTCTCTCGACCGGCTGTTCGTGCCGCCGGATACTGAAGTCTCATTGGACACAATAGGGATTAGGGTTCTAAAAGGTTCGAACATAGTG CTCAGCAAGTACGCGAGGGATGCCCAGATAGTGCAGGCGGAGTTTGTGAAGAGCAGTGTGAAGACTGAGGATTGCCCCTCCGAGGGTTGGCCTGAATTCG CTCTCGTTGGGAGGTCCAATGTTGGTAAATCTTCGCTTCTCAACTCGCTGGTCAGAAGGAAGAAGCTCGCCCTCACTTCTAAGAAACCTGGGAAGACGCA ATGCATAAACCATTTTCGGATCAATGATAGCTGGTTCTTGGTGGATTTGCCTGGATATGGATATGCAGTTGCACCACACGAGCTCCGAACAGATTGGGGA AAATTTACCAAGGATTATTTTTGCAACCGTTCAACATTAGTCTCTGTATTCCTACTTATAGATGCTAGCATTCCCGCAAAGAAAATCGATCTAGAATATG CAAGCTGGCTCGGTCAGAATCAGATTCCGATGACATTAGTTTTCACAAAATGTGACAAGAGGAAGAAGAAGAAGAACGGAGGGAAGCATCCAGAAGAGAA TGCAAAGGATTTTCAAGAGCTGATTCGAGGTTACTTCCAGACAACGCCACCATGGATTATGACAAGCAGTGTTACAAATCAAGGGCGTGATGAGATACTA TTGCACATGGCTCAATTGCGCAACTACTGGCTTAAGCATTGA
AA sequence Show only first row Show all	>Lus10022126 pacid=23146458 polypeptide=Lus10022126 locus=Lus10022126.g ID=Lus10022126.BGIv1.0 annot-version=v1.0 MAVLMHHLPKLQLCTSIFTRPSPSLTRHFNSILCAKLSLPTFIRPQSALSAVEPIPVSQLVDPPDETQVPISLDRLFVPPDTEVSLDTIGIRVLKGSNIV LSKYARDAQIVQAEFVKSSVKTEDCPSEGWPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINDSWFLVDLPGYGYAVAPHELRTDWG KFTKDYFCNRSTLVSVFLLIDASIPAKKIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKHPEENAKDFQELIRGYFQTTPPWIMTSSVTNQGRDEIL LHMAQLRNYWLKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11480			P-loop containing nucleoside t...		Lus10022126 [exp]	0	1
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	3.0	0.9047
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	8.8	0.8633
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	8.8	0.8705
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	10.5	0.8919
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	12.0	0.8681
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	18.0	0.8345
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	18.2	0.8710
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	18.5	0.8595
AT5G66550			Maf-like protein (.1)		Lus10040470 [exp]	20.5	0.8730
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	22.0	0.8798

Compare expression of checked genes

Lus10022126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.