Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30780 75 / 3e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 70 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 70 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 68 / 6e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G26680 67 / 6e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 67 / 1e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63130 67 / 1e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17670 65 / 4e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G63070 65 / 5e-11 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G04810 65 / 6e-11 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011676 [exp] 557 / 0 AT3G48810 63 / 1e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 88 / 2e-18 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 86 / 1e-17 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034924 [exp] 76 / 2e-14 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10042683 [exp] 75 / 3e-14 AT2G30780 451 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023650 [exp] 71 / 5e-13 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10029620 [exp] 70 / 1e-12 AT2G30780 455 / 5e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009465 [exp] 68 / 5e-12 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001284 [exp] 67 / 2e-11 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243000 [exp] 474 / 1e-166 AT2G30780 84 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G119600 [exp] 98 / 9e-22 AT2G30780 432 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 74 / 3e-14 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G081700 [exp] 70 / 1e-12 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.014G166001 [exp] 69 / 3e-12 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G092100 [exp] 68 / 6e-12 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123600 [exp] 68 / 8e-12 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 67 / 2e-11 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 66 / 2e-11 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 65 / 4e-11 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022128 pacid=23146462 polypeptide=Lus10022128 locus=Lus10022128.g ID=Lus10022128.BGIv1.0 annot-version=v1.0 ATGGCACTTGCAGCAGCAAGCAGGAGATTCTTGACCCCGGCGACCGGAAGATCGAGTCCATCACTGCCTTCTTGTTTTCAATCAAGACTACGTAGTATCT GCAACTCAACTTCTGCTTCCGATGATACACTGCTCCAAAAATTGCTTCAGCTCTCCACCTCTCAAATCAAACGCTCTCTCGACTCCGAGGGAGCAGCTGC GTTCGTTTGCTGCGATTCTCTTGTCGCTCGTCTCGCCTCTTCTTCTCCTCAGAAAGCCAAGCTCGTTCTGGAATGGAGACTGGAGAGACTGCTTAAAAAC AGCGAAAAAGATTACAGCCACTACTCCAGTCTGATATCTCTTTGTGCTACGATTCGAGATGTCCCGCTGGCAATGTCCATGTTTACTTGTATGGAGGCTT GTGGAATTCACCCCACAACTTCAGTTTTCAATTCGCTAATCCATACTTGCCTGTCCTCAAACGATGTAATGACTTCATTGAGCTTGTTCGAGGTTATGGA AAGCTCTGAAAGGCTTAGGCCGGATTCTGAAACTTATGACACTTTCATATTGGGGTTTTCCAATTTAAGAGACATCAATAGGACGCGAGCTTGGTATCAG GCGAAAATGGATGCTGGGTTCTCTGCTAATTTACGGAACTATGAATCTCTTATCTTTTGCTGTGTTAAGGCCAAGGATTTCAGTTCTGCTGACTTATTTT ATGAGGAAATGATGGCTCTAGGAATGGTCCCTAGTTTGAAAGTGCTGGATTGTGTGCTTGATGGGCTTTGCAAGAGGAGGAATTGTGACCGGGTTAAGGA GTTTGTCAAATTTATGTTGGAATGTCGGTTTGAGGTTAATGGTACTTTGGTGGACAAGGTTGTGAAGTTGTATTCTGAACTTGAGAAAACAGATGAAATG GAGCAGCTACTTCAGACTCTAATGGAGTTCAATCAAGATGGTGAAGCTTTGTTACAGGTGCATTGTGGGATTATAAGGCTTTATGCAAAGCTAGATAGAT TGGATGATGTTGAATACTCGGTTGGGAAGATGACGAGGCAGGGGATGTCATTCAGCAGTCCAGGTGATGTTGAGAAGGTAATCTCTGCATACTTCAGGCA ACAAGCTTATGACAGACTGGAGTTGTTTCTGGAACATGTAAAGAGATATTATAAACTGACAAGGTCAACCTTTGATTTGTTGGTGGCTGGATATCGAAGG GCTGGGTTGACTGATAAACTGGAATCCGTTGTTAAGGATATGGAGTTGTCTGGGGTATTAGCATCTTGA
AA sequence Show only first row Show all	>Lus10022128 pacid=23146462 polypeptide=Lus10022128 locus=Lus10022128.g ID=Lus10022128.BGIv1.0 annot-version=v1.0 MALAAASRRFLTPATGRSSPSLPSCFQSRLRSICNSTSASDDTLLQKLLQLSTSQIKRSLDSEGAAAFVCCDSLVARLASSSPQKAKLVLEWRLERLLKN SEKDYSHYSSLISLCATIRDVPLAMSMFTCMEACGIHPTTSVFNSLIHTCLSSNDVMTSLSLFEVMESSERLRPDSETYDTFILGFSNLRDINRTRAWYQ AKMDAGFSANLRNYESLIFCCVKAKDFSSADLFYEEMMALGMVPSLKVLDCVLDGLCKRRNCDRVKEFVKFMLECRFEVNGTLVDKVVKLYSELEKTDEM EQLLQTLMEFNQDGEALLQVHCGIIRLYAKLDRLDDVEYSVGKMTRQGMSFSSPGDVEKVISAYFRQQAYDRLELFLEHVKRYYKLTRSTFDLLVAGYRR AGLTDKLESVVKDMELSGVLAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15630			Pentatricopeptide repeat (PPR)...		Lus10022128 [exp]	0	1
AT4G16440			ferredoxin hydrogenases (.1)		Lus10039061 [exp]	2.6	0.7430
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	9.7	0.7295
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10028877 [exp]	16.9	0.6874
AT5G24680			Peptidase C78, ubiquitin fold ...		Lus10032907 [exp]	34.4	0.6270
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	42.7	0.6104
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	61.3	0.6171
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	70.9	0.6139
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	71.4	0.5792
AT5G36930			Disease resistance protein (TI...		Lus10005373 [exp]	77.2	0.5946
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	105.5	0.5855

Compare expression of checked genes

Lus10022128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.