Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 464 / 4e-155 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G32710 428 / 5e-145 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G52290 430 / 5e-144 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 424 / 1e-141 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G34440 426 / 3e-140 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 416 / 7e-137 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT5G38560 400 / 3e-130 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G23540 392 / 2e-126 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G68690 390 / 4e-126 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G70460 390 / 4e-126 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011678 [exp] 605 / 0 AT3G24550 381 / 3e-127 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 462 / 1e-153 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 457 / 1e-152 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 444 / 8e-148 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 416 / 2e-137 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 405 / 2e-136 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 408 / 2e-134 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10040467 [exp] 403 / 1e-132 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 402 / 4e-131 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G242800 [exp] 489 / 5e-164 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.018G081300 [exp] 461 / 5e-154 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 441 / 3e-147 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 437 / 2e-145 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 434 / 1e-144 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G027000 [exp] 434 / 9e-144 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.004G153600 [exp] 414 / 1e-135 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 412 / 2e-135 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 406 / 7e-132 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 405 / 2e-131 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022129 pacid=23146467 polypeptide=Lus10022129 locus=Lus10022129.g ID=Lus10022129.BGIv1.0 annot-version=v1.0 ATGGCCTCATCTCCTCTTGGGTCCCTGCCTCCGGCTGATTCCCCTGCTGGTATCATTTCACCGTCACCATTGTCCTCTCCACCGGCTCCCGTGGTGGGTA GTCCTAGTCAGCGGCCACTCTCGCCGGTAGTACCTTCCATCTCTCCACCACCTCCTTCATTGACACCTGCAAGTTCACCTCCTCCTGTTACCGCCTCACC GCCATTGCCGGATTCATCTCCACCAGAACCACCGCCGGTTTCCTCTGAACCACCGCCACCACGTCTTGCTAATACTCCCACTCCCAGTCCTCCTGTGATT ATTAGTCCGGTAGTTTCCCCATTGCGTCCTCAGCCCTCACCACCAAGTATTCCTTCACTTCCTCTCCTGCGATCTCCTCCGCCTCAGCTGCCACCCTCCT TGCCAGTCTCCCCACCGACGCGTCCATCAACTCCCAGTCGTCCTGTGATTATTAGTCCGGTGGTTTCCCCCGTACGTCCTCAGCCTAAAATCTCCCCACC AAGTGATGGTATTCCTTCAGGTCCTCTCCCGCCATCTCCTCAAAAACCTTATCTTCCTCCTCCTCCACTTTCAGCAATAACTCCGTCGTCATTAGTAGCA CCAGCCACATCACAAACGTCTCTACCGCCTCCCAAAAACTCCGGCGACCCACATGCATTTGCTCAAGAGAATCCGCGGCCTTCTTCGCCTCTGCAAACCG CTTCTCCTCCGCCTATTGTTGCGCTGCCGTTGGTGACTGCAAATCTCCCCAGGAGCATCAAACAGCAACATCAAATACCAGCAGCAGGGCTCATACTTGG GTACGTTGTCGGAGCAGCTGTTCTCTTTCTCTTACTTGCCTTCTTTGTGTACAAATGGATCACAAGGACAAACCGTCAACGAGAGGATCATTTCGCAGAG AAACGTCCGGCCTTGCCGCAAAGCGGTATCATCCACGGAGGTGATTTAGCTGTGGGGGATCAACAATGTCATCACAACACCTCATTAGCTCCCGGTGGAC ACATAATCAACTTTGAAGCTCAGGAATCAACAGAGGAGCTGCATTCTTCGCATCTTACGGGTTTAGGTGGATCTTTCACTTATGAAGAGCTAGCAGTAGC TACTAATGGTTTCTCAGAGGGTAATCTTGTTGGGGAAGGAGGGTTTGGATACGTCCATAGAGGGCTTCTTTCTAATGGAAAAGAAGTTGCAGTGAAGCAA CTGAGGGAAGGAAGGAAACAAGGGGAGAAGGAGTTTCAGGCGGAGGTTGAAATCATCAGTAGAATACATCACAAGCATTTGGTCTCCTTGATTGGCTACT GCATCAATGGAGTCAAGAGGCTGCTTGTTTATGAGTTCGTCTCAAATAACACTCTGGAATTCCACCTTCACGGGAATGGAGATGAGGTCATGTCGTGGGA AACTAGATTGAGAATTGCTATTGGGTCTGCTAAAGGACTTGCCTATCTCCACGAGGATTGTGATCCAAAGATCCTTCACCGTGATATCAAGGCTGCCAAT ATTCTAGTTGATCAGAACTTTGAGGCTAAGGTGTCTGATTTTGGACTGGCAAGAAGTTATTCTGATGCTTCCATAACTCACGTTTCCACTCAGGTGGTTG GAACTTTTGGGTACTTGGCTCCGGAATATGCATCAAGCGGGAAAGTAACAGAAAAATCAGATGTTTATTCTTACGGGGTTGTGCTTCTTGAGCTAATAAC AGGACGTCCACCGATCTGCTTCTCAGAATCTGTATCAAGAACAAGCTTGGTTGAGTGGGCTAGGCCTTTGCTGACTGGAGCAGTGGAAAGAAGAAACTTC GAAGGTCTTGTTGATCCGCGGTTACAAAATAAGTACGACATCAGTGAGATGACTCAAATGGTTGCTTGTGCAGCTGCATGCGTCAGGCATTCAGCATGGC TTAGGCCACGGATGAGCCAGGTGGTTCATGCCCTGGAAGGAGGTACATTCGCATTCTTGAATATGGACAACATAAACAAGCCTGGCCACAGCACAATCTT CAGCTCCAGTCCTTCTTCCAAAGGCTCAAACTATGACTTCAAGCAGTACAAGGATGAAATGTTCAAGTTCAATGTTGCATTGGCGAGTGACCAGTGA
AA sequence Show only first row Show all	>Lus10022129 pacid=23146467 polypeptide=Lus10022129 locus=Lus10022129.g ID=Lus10022129.BGIv1.0 annot-version=v1.0 MASSPLGSLPPADSPAGIISPSPLSSPPAPVVGSPSQRPLSPVVPSISPPPPSLTPASSPPPVTASPPLPDSSPPEPPPVSSEPPPPRLANTPTPSPPVI ISPVVSPLRPQPSPPSIPSLPLLRSPPPQLPPSLPVSPPTRPSTPSRPVIISPVVSPVRPQPKISPPSDGIPSGPLPPSPQKPYLPPPPLSAITPSSLVA PATSQTSLPPPKNSGDPHAFAQENPRPSSPLQTASPPPIVALPLVTANLPRSIKQQHQIPAAGLILGYVVGAAVLFLLLAFFVYKWITRTNRQREDHFAE KRPALPQSGIIHGGDLAVGDQQCHHNTSLAPGGHIINFEAQESTEELHSSHLTGLGGSFTYEELAVATNGFSEGNLVGEGGFGYVHRGLLSNGKEVAVKQ LREGRKQGEKEFQAEVEIISRIHHKHLVSLIGYCINGVKRLLVYEFVSNNTLEFHLHGNGDEVMSWETRLRIAIGSAKGLAYLHEDCDPKILHRDIKAAN ILVDQNFEAKVSDFGLARSYSDASITHVSTQVVGTFGYLAPEYASSGKVTEKSDVYSYGVVLLELITGRPPICFSESVSRTSLVEWARPLLTGAVERRNF EGLVDPRLQNKYDISEMTQMVACAAACVRHSAWLRPRMSQVVHALEGGTFAFLNMDNINKPGHSTIFSSSPSSKGSNYDFKQYKDEMFKFNVALASDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	3.5	0.8448
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	7.6	0.8211
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	8.2	0.8794
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	8.6	0.8168
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	9.7	0.8791
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10000395 [exp]	11.7	0.8418
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	13.2	0.8762
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10027665 [exp]	14.1	0.8373
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	14.7	0.8700
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	16.4	0.7869

Compare expression of checked genes

Lus10022129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.