Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24570 205 / 8e-67 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT5G43140 53 / 2e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 45 / 8e-06 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 44 / 1e-05 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 41 / 0.0002 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G33905 41 / 0.0002 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G19750 41 / 0.0003 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011679 [exp] 323 / 1e-113 AT3G24570 249 / 2e-84 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10038626 [exp] 253 / 4e-86 AT3G24570 273 / 1e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10037900 [exp] 223 / 2e-73 AT3G24570 246 / 3e-82 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10034922 [exp] 206 / 3e-67 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 203 / 2e-66 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10011424 [exp] 46 / 6e-06 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018700 [exp] 46 / 6e-06 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 45 / 2e-05 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10007761 [exp] 42 / 0.0002 AT5G43140 223 / 1e-70 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037100 [exp] 244 / 1e-82 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 216 / 1e-71 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.006G242700 [exp] 178 / 4e-57 AT3G24570 214 / 4e-71 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G296400 [exp] 44 / 2e-05 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.009G090600 [exp] 44 / 2e-05 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G029700 [exp] 43 / 6e-05 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 40 / 0.0004 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10022130 pacid=23146457 polypeptide=Lus10022130 locus=Lus10022130.g ID=Lus10022130.BGIv1.0 annot-version=v1.0 ATGTTGAAGTTAGGGAAGTGGTTTGAGCGGTCTATGGCGGTGCATCCAGTGAAAACGCAGATGATCAGCTCTGCTTTGATATGGGGTGTTGGTGACTTTG CGGCTCAGTCCATCACCCACTACGTACTTACTCCCACAACCCTCTTTCTCGCTTTCCAGGGTGATCAAGTAGTTGACTGGAGAAGAGTGGCAACCACCAG CTTGTTTGGGTTTGGATTCGTCGGACCAGTTGGCCACTTCTGGTACGAAGGTCTAGACAAATTCATAAGGTCAAAGTTCTCTCGACCGAATTCATTGAGG TTCGTTGGTGCTAAAGTGGTGATCGACAGTCTGTTGCTAGGGCCATTGGATCTCCTGTTGTTCTTCAGTTACATGGGGTTTGCTACCGGGAAGAGCATGT CACAAATAAAGGGCGACGTGAAGAGAGATTTCGTGCCGGCTTTGGTGATGGAAGGCCTGTGGCCACTTGTTCAAGCGGCCAACTTTCGATTCGTGCCAGT GAAATATCAGCTTCTGTATGTCAACATGTTCTGCTTGTTGGATAGTTGCTTCCTTTCCTGGGTTGAACAGCAGCACAGTGCTCCTTGGAAGACATGGGTC AACTCTTTCTTGCCTTAA
AA sequence Show only first row Show all	>Lus10022130 pacid=23146457 polypeptide=Lus10022130 locus=Lus10022130.g ID=Lus10022130.BGIv1.0 annot-version=v1.0 MLKLGKWFERSMAVHPVKTQMISSALIWGVGDFAAQSITHYVLTPTTLFLAFQGDQVVDWRRVATTSLFGFGFVGPVGHFWYEGLDKFIRSKFSRPNSLR FVGAKVVIDSLLLGPLDLLLFFSYMGFATGKSMSQIKGDVKRDFVPALVMEGLWPLVQAANFRFVPVKYQLLYVNMFCLLDSCFLSWVEQQHSAPWKTWV NSFLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	0	1
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	1.0	0.9577
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	3.2	0.9574
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	5.2	0.9504
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	6.3	0.9474
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	6.6	0.9490
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	7.1	0.9337
AT2G37530			unknown protein		Lus10024416 [exp]	8.9	0.9402
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10005999 [exp]	9.2	0.9236
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	9.8	0.9459
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10038937 [exp]	11.5	0.9291

Compare expression of checked genes

Lus10022130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.